User talk:Dennis9600: Difference between revisions

From Eterna Wiki

Latest comment: 19 October 2013 by Omei

(G-quadraplex prediction)
No edit summary
Line 7: Line 7:
<p>I recently discovered that RNAFold now supports G-quadraplex prediction, but it needs the command line switch -g or --gquad to turn it on.&nbsp; This would very useful for the current round's <em>Impossible Folding II - The Intramolecular G-quadruplex</em> lab.</p>
<p>I recently discovered that RNAFold now supports G-quadraplex prediction, but it needs the command line switch -g or --gquad to turn it on.&nbsp; This would very useful for the current round's <em>Impossible Folding II - The Intramolecular G-quadruplex</em> lab.</p>
<p>[[User:Omei|Omei]] ([[User talk:Omei|talk]]) 15:53, 7 October 2013 (UTC)</p>
<p>[[User:Omei|Omei]] ([[User talk:Omei|talk]]) 15:53, 7 October 2013 (UTC)</p>
<p>---</p>
<h3>Current release of Vienna package</h3>
<p>This is petty of me to mention, but the ensemble frequency the 2.1.1 version gave my <span id="docs-title" class="docs-title docs-title-disabled">T-thermophilise </span>design "Indian Corn" was only 45.5%, compared to the 48.1% I had very carefully crafted using the current web server version. :-( .&nbsp; It looks like the most recent version is 2.1.3, and apparently it is an improvement over 2.1.1. :-)</p>
<p>(Please don't feel compelled to rerun everything for this!)</p>
<p>[[User:Omei|Omei]] ([[User talk:Omei|talk]]) 04:08, 19 October 2013 (UTC)</p>
<p>---</p>
<div style="float: left;">
<div style="float: left;">
<p><strong><br /></strong></p>
<p><strong><br /></strong></p>
</div>
</div>

Revision as of 04:08, 19 October 2013

Suggestion for links to documents

Dennis, I'm interested in following your progress on this.  Something that would help me would be to make your links more useful by displaying a meaningful name rather than the document URL.  I've changed one as an illustration.

To do this in the WIZWIG editor, type the the text for what you want the user to see and then select it.  Next click on the "chain link" icon (top row of the editor tool bar).  You don't need to fill in all the options; the important one is the link URL.

Omei (talk) 18:21, 9 September 2013 (UTC)Reply[reply]

---

Incorporating G-quadraplex prediction

I recently discovered that RNAFold now supports G-quadraplex prediction, but it needs the command line switch -g or --gquad to turn it on.  This would very useful for the current round's Impossible Folding II - The Intramolecular G-quadruplex lab.

Omei (talk) 15:53, 7 October 2013 (UTC)Reply[reply]

---

Current release of Vienna package

This is petty of me to mention, but the ensemble frequency the 2.1.1 version gave my T-thermophilise design "Indian Corn" was only 45.5%, compared to the 48.1% I had very carefully crafted using the current web server version. :-( .  It looks like the most recent version is 2.1.3, and apparently it is an improvement over 2.1.1. :-)

(Please don't feel compelled to rerun everything for this!)

Omei (talk) 04:08, 19 October 2013 (UTC)Reply[reply]

---