User:Omei/Cloud Lab Data Mining Tool

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Cloud Lab Data Mining Tool

At this point, the biggest need I feel in EteRNA is for a way to extract meaning from the results of thousands of lab designs that have been synthesized.  Ideally, something addressing this need will be built into the EteRNA GUI.  But I decided to just see what I could do to contribute ideas and a sample implementation.

 

I envision three major major parts.

  1. A method for finding the labs that are relevant to a particular question.  As a starting point, this might take the form of searching by sequence or structure motif.  Examples of this are  <a href="http://cossmos.slu.edu/search.php">CoSSMoS</a> and <a href="http://rmdb.stanford.edu/repository/advanced_search/">RMDB</a>.

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