User:ElNando888/Blog/Mimic: Difference between revisions
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ElNando888 (talk | contribs) (Created page with "<p> </p> <p>This entry won't develop much to a blog post. I'm just throwing ideas in the context of a discussion I'm having with Brourd about mimcs.</...") |
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<p>A possible way to compensate the difference would be to use a reduced form of the loop, with an additional cWW pair, like in [http://rna.bgsu.edu/rna3dhub/motif/view/IL_49493.4 motif IL_49493.4]</p> | <p>A possible way to compensate the difference would be to use a reduced form of the loop, with an additional cWW pair, like in [http://rna.bgsu.edu/rna3dhub/motif/view/IL_49493.4 motif IL_49493.4]</p> | ||
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<p>By the way, this canonical pairs mimic...</p> | |||
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<td>[[File:Mimic 1.png]]</td> | |||
<td>[[File:Mimic 2.png]]</td> | |||
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<p>I'm counting -11.9 kcal, much more than the -4.9 that we're supposed to mimic...</p> |
Revision as of 01:24, 18 February 2014
This entry won't develop much to a blog post. I'm just throwing ideas in the context of a discussion I'm having with Brourd about mimcs.
<tbody> </tbody>
FMN | Sarcin-ricin (15 nts) |
The top half is structurally quite similar, but the bottom differs a bit. Specifically, it is undeniable that the FMN molecule offers a much larger stacking area than the A+A platform in motif IL_85647.3
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FMN | Sarcin-ricin (13 nts) |
A possible way to compensate the difference would be to use a reduced form of the loop, with an additional cWW pair, like in motif IL_49493.4
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By the way, this canonical pairs mimic...
<tbody> </tbody>I'm counting -11.9 kcal, much more than the -4.9 that we're supposed to mimic...