User:ElNando888: Difference between revisions

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<p>The online tools I like to use</p>
<p>The online tools I like to use</p>
<ul>
<ul>
<li>[http://rnacomposer.ibch.poznan.pl/Home RNAComposer], ([http://rnacomposer.cs.put.poznan.pl/ mirror]), because it's real fast, even if it's far from perfect (see [[#Humor|the Humor section]])</li>
<li>[http://rnacomposer.ibch.poznan.pl RNAComposer], ([http://rnacomposer.cs.put.poznan.pl/ mirror]), because it's real fast, even if it's far from perfect (see [[#Humor|the Humor section]])</li>
<li>[http://www.cgl.ucsf.edu/chimera/ Chimera], because it's quite cheap ^^</li>
<li>[http://www.cgl.ucsf.edu/chimera/ Chimera], because it's quite cheap ^^</li>
</ul>
</ul>

Revision as of 07:39, 3 April 2020

This is <a href="http://eterna.cmu.edu/web/player/49507/" target="_blank">me on EteRNA</a>.

 

Tip: while we're still working on the look and feel of this wiki, I would strongly suggest those using Chrome or Firefox to install the Stylish extension (if they haven't done so already), and to apply this stylesheet I composed myself. Everything should feel much more comfortable. I certainly hope that we'll fix this properly in the future, but in the meantime, this could make the experience a little more enjoyable (it does for me).

 

 

My Groups

 

Documents

Written here on this wiki :

 

A few things I wrote as Google Docs :

 

Projects

 

Links

3D structure prediction, visualization and design.

The online tools I like to use

 

Scientific papers

Not all I've read, but those that inspired ideas for my designs and for my bot Vinnie.

 

Educational Resources

  • Proteopedia
    Not really about RNA, but their usage of 3D interactive applets is awesome (see here and here) and I would so very much like to have those tools here, on this wiki. 

 

Other

  • Benchmark Energy Geometry DataBase
    This is clearly violently hardcore. Probably only for physicists like Rhiju, or terminally addicted nutcases like Brourd and myself. 

 

Scratch Pad

 

Humor

Warning: don't trust me with folding your RNA, this is what happens when I try to play with nucleotides :

 

a knot...

 

a "zipper accident"...

 

pushing the limits, a double zipper accident!

 

Q: Why would you do a boring 1-2 internal loop, when you can make the most dramatic U-turn by passing a base-pair bond right in the middle of the stacking space of existing pairs?
A: You said to fold, right? This is as folded as it gets.

 

Something else with your RNA bolognese?

 

and sometimes, the thing just explodes...

 

:D

(nope, no special effects were required to take these shots)