Reproducibility Test Lab

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Revision as of 17:36, 30 August 2013 by Omei (talk | contribs) (Added very short sequence)

The Reproducibilty Test Lab is a special lab that is (will be) synthesized in each synthesis round.  The objectives for this lab are:

  • Provide a consistent measure of the reproducibilty of the cloud lab synthesis results, for long term quality control,
  • Determine how much of the variation in synthesis results is captured by the error estimates reported for each synthesized base,
  • Provide some guidance as to where the synthesis process might be improved, in order to increase reproducibility, and
  • Give those analysing the synthesis data a better understanding of the variation to expect when comparing data from different synthesis rounds.

 

Initial Sequences

<tbody> </tbody>
Sequence Description of rationale for inclusion
Original SHAPE data, or expected folding

AGUCAUCUAC UACGAAAAAC ACAUUCUAUU CGAAAACGAA UAGAAUGUGU CGUAGUAGAU GAC

Cloud Lab 1 representative.
Round 1. ID=2366937.
Score = 94.

SHAPE 2366937.png
GCAAGGACGA AUAAGCCAUA ACCGCAGGGA AACACUGAAC GGAGCCGAAA GAGCAAGCAA UAA

Cloud Lab 4 representative.
Round 2. ID=2655773.
Score = 88.

SHAPE 2655773.png
     
     
     
     
     
     
 AUCGAAAGAU  Very short sequence