Reproducibility Test Lab: Difference between revisions
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<td> | <td><span style="font-family: courier new,courier;">GAGAUGGGUA ACGAAAGUUG CGCUGCCGAA UGAAAGUUCU GGAUGAAAGU CUGGUGGCCU AUC </span></td> | ||
< | <td>[http://eterna.cmu.edu/web/lab/2333366 Cloud Lab 9] representative.<br />Round 2. ID=[http://eterna.cmu.edu/game/browse/2333366/?filter1_arg1=2588792&filter1=Id&filter1_arg2=2588792 2588792].<br />Score = 78. High GU content.<br /></td> | ||
<td>[http://eterna.cmu.edu/web/lab/2333366 Cloud Lab 9] representative.<br />Round 2. ID=[http://eterna.cmu.edu/game/browse/ | |||
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<td> </td> | <td><span style="font-family: courier new,courier;">AGAGUGAAGG ACGGAGAAUC UCCGUCGUCG CGAAGCGGCC CUGGGCUUCC CAGGCUUCAC UCA </span></td> | ||
<td>[http://eterna.cmu.edu/web/lab/ | <td>[http://eterna.cmu.edu/web/lab/2333413 Cloud Lab 15] representative.<br />Round 1. ID=[http://eterna.cmu.edu/game/browse/2333413/?filter1_arg1=2337872&filter1=Id&filter1_arg2=2337872 2337872].<br />Score = 96.</td> | ||
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<td> </td> | <td><span style="font-family: courier new,courier;">GAGAUAUUAU AAUAUUAUAA UAUGCAAAGA AAUAAGAAGC AUAUUAUAAU AUUAUAAUAU CAA </span></td> | ||
<td>[http://eterna.cmu.edu/web/lab/ | <td>[http://eterna.cmu.edu/web/lab/2333432 Cloud Lab 18] representative.<br />Round 2. ID=[http://eterna.cmu.edu/game/browse/2333432/?filter1_arg1=2596919&filter1=Id&filter1_arg2=2596919 2596919].<br />Score = 98. High AU count.<br /></td> | ||
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<td> </td> | <td><span style="font-family: courier new,courier;">GCGGAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAC CGC </span></td> | ||
<td> </td> | <td> [http://eterna.cmu.edu/web/lab/2333436 Clouud Lab 19] representative.<br />Round 1. ID=[http://eterna.cmu.edu/game/browse/2333436/?filter1_arg1=2339041&filter1=Id&filter1_arg2=2339041 2339041].<br />Score = 92. Big loop of all A.<br /></td> | ||
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<td> </td> | <td> [http://eterna.cmu.edu/web/lab/NNNNNNN LabName] representative.<br />Round N. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=SOLNNNN&filter1=Id&filter1_arg2=SOLNNNN SOLNNNN].<br />Score = NN.</td> | ||
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<td> </td> | <td> </td> | ||
<td> </td> | <td> [http://eterna.cmu.edu/web/lab/NNNNNNN LabName] representative.<br />Round N. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=SOLNNNN&filter1=Id&filter1_arg2=SOLNNNN SOLNNNN].<br />Score = NN.</td> | ||
<td> </td> | <td> </td> | ||
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<td> </td> | <td> </td> | ||
<td> </td> | <td> [http://eterna.cmu.edu/web/lab/NNNNNNN LabName] representative.<br />Round N. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=SOLNNNN&filter1=Id&filter1_arg2=SOLNNNN SOLNNNN].<br />Score = NN.</td> | ||
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Revision as of 03:03, 31 August 2013
[http: LabName] representative.
Round N. ID=[http: DesignID].
Score = NN.
The Reproducibilty Test Lab is a special lab that is (will be) synthesized in each synthesis round. The objectives for this lab are:
- Provide a consistent measure of the reproducibilty of the cloud lab synthesis results, for long term quality control,
- Determine how much of the variation in synthesis results is captured by the error estimates reported for each synthesized base,
- Provide some guidance as to where the synthesis process might be improved, in order to increase reproducibility, and
- Give those analysing the synthesis data a better understanding of the variation to expect when comparing data from different synthesis rounds.
Initial Sequences
<tbody> </tbody>| Sequence | Description of rationale for inclusion |
Original SHAPE data, or expected folding |
|
AGUCAUCUAC UACGAAAAAC ACAUUCUAUU CGAAAACGAA UAGAAUGUGU CGUAGUAGAU GAC |
Cloud Lab 1 representative. |
 |
| GCAAGGACGA AUAAGCCAUA ACCGCAGGGA AACACUGAAC GGAGCCGAAA GAGCAAGCAA UAA |
Cloud Lab 4 representative. |
 |
| GAGAUGGGUA ACGAAAGUUG CGCUGCCGAA UGAAAGUUCU GGAUGAAAGU CUGGUGGCCU AUC | Cloud Lab 9 representative. Round 2. ID=2588792. Score = 78. High GU content. |
|
| AGAGUGAAGG ACGGAGAAUC UCCGUCGUCG CGAAGCGGCC CUGGGCUUCC CAGGCUUCAC UCA | Cloud Lab 15 representative. Round 1. ID=2337872. Score = 96. |
|
| GAGAUAUUAU AAUAUUAUAA UAUGCAAAGA AAUAAGAAGC AUAUUAUAAU AUUAUAAUAU CAA | Cloud Lab 18 representative. Round 2. ID=2596919. Score = 98. High AU count. |
|
| GCGGAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAC CGC | Clouud Lab 19 representative. Round 1. ID=2339041. Score = 92. Big loop of all A. |
|
| LabName representative. Round N. ID=SOLNNNN. Score = NN. |
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| LabName representative. Round N. ID=SOLNNNN. Score = NN. |
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| LabName representative. Round N. ID=SOLNNNN. Score = NN. |
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| AUCGAAAGAU | Very short sequence |
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rhiju → Omei: please submit up to 40 sequences, this weekend if possible!
Omei → rhiju: Will do. Am I correct in thinking that can refine the set over time, if we decide we would benefit from different sequences?
rhiju → Omei: yes of course. I think we're granting you (and the players you represent) a 'standing order' of 40 sequences over each cycle to characterize errors and to make suggestions to us devs for viewing & experimental improvements. I'm excited to see what you find!
Omei → rhiju: Will do. Am I correct in thinking that can refine the set over time, if we decide we would benefit from different sequences?
rhiju → Omei: yes of course. I think we're granting you (and the players you represent) a 'standing order' of 40 sequences over each cycle to characterize errors and to make suggestions to us devs for viewing & experimental improvements. I'm excited to see what you find!
