Reproducibility Test Lab: Difference between revisions
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<p> [http: LabName] representative.<br />Round N. ID=[http: DesignID].<br />Score = NN.</p> | |||
<p>The Reproducibilty Test Lab is a special lab that is (will be) synthesized in each synthesis round. The objectives for this [[lab]] are:</p> | <p>The Reproducibilty Test Lab is a special lab that is (will be) synthesized in each synthesis round. The objectives for this [[lab]] are:</p> | ||
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<td>[http://eterna.cmu.edu/web/lab/NNNNNNN LabName] representative.<br />Round N. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=SOLNNNN&filter1=Id&filter1_arg2=SOLNNNN SOLNNNN].<br />Score = NN.</td> | |||
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<td>GAGAUGGGUAACGAAAGUUGCGCUGCCGAAUGAAAGUUCUGGAUGAAAGUCUGGUGGCCUAUCGCUACAGUUCGCUGUGGUAAAAGAAACAACAACAACAAC</td> | |||
<td>[http://eterna.cmu.edu/web/lab/2333366 Cloud Lab 9] representative.<br />Round 2. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=2333366 &filter1=Id&filter1_arg2=2588792 2588792].<br />Score = 78. High GU content.<br /></td> | |||
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<td>[http://eterna.cmu.edu/web/lab/NNNNNNN LabName] representative.<br />Round N. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=SOLNNNN&filter1=Id&filter1_arg2=SOLNNNN SOLNNNN].<br />Score = NN.</td> | |||
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<td>[http://eterna.cmu.edu/web/lab/NNNNNNN LabName] representative.<br />Round N. ID=[http://eterna.cmu.edu/game/browse/LABNNNN/?filter1_arg1=SOLNNNN&filter1=Id&filter1_arg2=SOLNNNN SOLNNNN].<br />Score = NN.</td> | |||
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<div id="_mcePaste" class="mcePaste" style="position: absolute; left: -10000px; top: 0px; width: 1px; height: 1px; overflow: hidden;">rhiju → Omei: please submit up to 40 sequences, this weekend if possible!<br /><br />Omei → rhiju: Will do. Am I correct in thinking that can refine the set over time, if we decide we would benefit from different sequences?<br /><br />rhiju → Omei: yes of course. I think we're granting you (and the players you represent) a 'standing order' of 40 sequences over each cycle to characterize errors and to make suggestions to us devs for viewing & experimental improvements. I'm excited to see what you find!</div> | |||
Revision as of 02:32, 31 August 2013
[http: LabName] representative.
Round N. ID=[http: DesignID].
Score = NN.
The Reproducibilty Test Lab is a special lab that is (will be) synthesized in each synthesis round. The objectives for this lab are:
- Provide a consistent measure of the reproducibilty of the cloud lab synthesis results, for long term quality control,
- Determine how much of the variation in synthesis results is captured by the error estimates reported for each synthesized base,
- Provide some guidance as to where the synthesis process might be improved, in order to increase reproducibility, and
- Give those analysing the synthesis data a better understanding of the variation to expect when comparing data from different synthesis rounds.
Initial Sequences
<tbody> </tbody>| Sequence | Description of rationale for inclusion |
Original SHAPE data, or expected folding |
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AGUCAUCUAC UACGAAAAAC ACAUUCUAUU CGAAAACGAA UAGAAUGUGU CGUAGUAGAU GAC |
Cloud Lab 1 representative. |
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| GCAAGGACGA AUAAGCCAUA ACCGCAGGGA AACACUGAAC GGAGCCGAAA GAGCAAGCAA UAA |
Cloud Lab 4 representative. |
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| LabName representative. Round N. ID=SOLNNNN. Score = NN. |
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| GAGAUGGGUAACGAAAGUUGCGCUGCCGAAUGAAAGUUCUGGAUGAAAGUCUGGUGGCCUAUCGCUACAGUUCGCUGUGGUAAAAGAAACAACAACAACAAC | Cloud Lab 9 representative. Round 2. ID=&filter1=Id&filter1_arg2=2588792 2588792. Score = 78. High GU content. |
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| LabName representative. Round N. ID=SOLNNNN. Score = NN. |
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| LabName representative. Round N. ID=SOLNNNN. Score = NN. |
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| AUCGAAAGAU | Very short sequence |
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rhiju → Omei: please submit up to 40 sequences, this weekend if possible!
Omei → rhiju: Will do. Am I correct in thinking that can refine the set over time, if we decide we would benefit from different sequences?
rhiju → Omei: yes of course. I think we're granting you (and the players you represent) a 'standing order' of 40 sequences over each cycle to characterize errors and to make suggestions to us devs for viewing & experimental improvements. I'm excited to see what you find!
Omei → rhiju: Will do. Am I correct in thinking that can refine the set over time, if we decide we would benefit from different sequences?
rhiju → Omei: yes of course. I think we're granting you (and the players you represent) a 'standing order' of 40 sequences over each cycle to characterize errors and to make suggestions to us devs for viewing & experimental improvements. I'm excited to see what you find!
