Difference between revisions of "Papers"

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<h2>Eterna Papers</h2>
 
<h2>Eterna Papers</h2>
 
<h3><span style="font-size: 1.17em;">New science</span></h3>
 
<h3><span style="font-size: 1.17em;">New science</span></h3>
<p>&nbsp;</p>
 
 
<ul>
 
<ul>
<li><a href="http://www.pnas.org/content/111/6/2122.full">RNA design rules from a massive open laboratory</a>&nbsp;Lee, J<span>,&nbsp;</span>Kladwang, W<span>,&nbsp;</span>Lee, M<span>,&nbsp;</span>Cantu, D<span>,&nbsp;</span>Azizyan, M<span>,&nbsp;</span>Kim H.<span>,&nbsp;</span>Limpaecher, A.<span>,&nbsp;</span>Yoon, S.<span>,&nbsp;</span>Treuille, A.<span>,&nbsp;</span>Das, R.<span>;&nbsp;</span>EteRNA Participants<span>.&nbsp;</span><span>Proc Natl Acad Sci U S A.</span><span>&nbsp;2014 Feb 11;111(6):2122-7.</span></li>
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<li>Lee, J,&nbsp;Kladwang, W,&nbsp;Lee, M,&nbsp;Cantu, D,&nbsp;Azizyan, M,&nbsp;Kim H.,&nbsp;Limpaecher, A.,&nbsp;Yoon, S.,&nbsp;Treuille, A.,&nbsp;Das, R.;&nbsp;EteRNA Participants (2014)&nbsp;<strong><a href="http://www.pnas.org/content/111/6/2122.full">RNA design rules from a massive open laboratory</a>&nbsp;</strong><span>Proc Natl Acad Sci U S A.</span><span>&nbsp;2014 Feb 11;111(6):2122-7.</span></li>
 
</ul>
 
</ul>
 
<p style="padding-left: 60px;"><a href="http://www.eternagame.org/web/news/3741483/">Developer Blog Intro</a></p>
 
<p style="padding-left: 60px;"><a href="http://www.eternagame.org/web/news/3741483/">Developer Blog Intro</a></p>
 
<ul>
 
<ul>
<li><a href="http://www.sciencedirect.com/science/article/pii/S0022283615006567/pdfft?md5=daf763eb099c9caf4efcba982c8f79c0&amp;pid=1-s2.0-S0022283615006567-main.pdf">Principles for predicting RNA secondary structure design difficulty</a></li>
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<li><strong><a href="http://www.sciencedirect.com/science/article/pii/S0022283615006567/pdfft?md5=daf763eb099c9caf4efcba982c8f79c0&amp;pid=1-s2.0-S0022283615006567-main.pdf">Principles for predicting RNA secondary structure design difficulty</a></strong></li>
 
</ul>
 
</ul>
 
<p style="padding-left: 60px;"><a href="http://www.eternagame.org/web/blog/6546445/">Blog review</a>&nbsp;[by Eli Fisker, one player lead author of this paper]</p>
 
<p style="padding-left: 60px;"><a href="http://www.eternagame.org/web/blog/6546445/">Blog review</a>&nbsp;[by Eli Fisker, one player lead author of this paper]</p>
<p style="padding-left: 60px;">&nbsp;</p>
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<h3>Reviews, perspectives, book chapters</h3>
<h3>Reviews, perspectives book chapters</h3>
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<ul>
 
<ul>
<li><a href="http://dx.doi.org/10.1016/j.sbi.2012.06.003">Squaring theory with practice in RNA design</a>&nbsp;Bida, J.P., Das, R., Current Opinion in Structural Biology,&nbsp;<span>2012 Aug;22(4):457-66.</span></li>
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<li>Bida, J.P., Das, R.,<strong>&nbsp;<a href="http://dx.doi.org/10.1016/j.sbi.2012.06.003">Squaring theory with practice in RNA design</a>&nbsp;</strong> Current Opinion in Structural Biology,&nbsp;<span>2012 Aug;22(4):457-66.</span></li>
 
</ul>
 
</ul>
 
<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;<a href="https://getsatisfaction.com/eternagame/topics/eterna_lets_work_on_a_paper_together?topic-reply-list[settings][filter_by]=all&amp;topic-reply-list[settings][reply_id]=9557289#reply_9557289">Forum review</a></p>
 
<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;<a href="https://getsatisfaction.com/eternagame/topics/eterna_lets_work_on_a_paper_together?topic-reply-list[settings][filter_by]=all&amp;topic-reply-list[settings][reply_id]=9557289#reply_9557289">Forum review</a></p>
<p>&nbsp;</p>
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<h3>Methods development</h3>
 
<h3>Other work using the Eterna experimental pipeline&nbsp;</h3>
 
<h3>Other work using the Eterna experimental pipeline&nbsp;</h3>
 
<ul>
 
<ul>
<li><span><a href="http://pubs.acs.org/doi/abs/10.1021/jp408530w">Isosteric And Nonisosteric Base Pairs In RNA Motifs: Molecular Dynamics And Bioinformatics Study Of The Sarcin Ricin Internal Loop</a>&nbsp; </span>Havrila, M., Reblova, K., Zirbel, C.L., Leontis, N.B., Sponer, J., Journal of Physical Chemistry B,&nbsp;<span class="citation_year">2013</span>,&nbsp;<span class="citation_volume">117</span>&nbsp;(46), pp 14302&ndash;14319.</li>
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<li><span>Havrila, M., Reblova, K., Zirbel, C.L., Leontis, N.B., Sponer, J.,&nbsp; (2013)&nbsp;<strong><a href="http://pubs.acs.org/doi/abs/10.1021/jp408530w">Isosteric And Nonisosteric Base Pairs In RNA Motifs: Molecular Dynamics And Bioinformatics Study Of The Sarcin Ricin Internal Loop</a>&nbsp; </strong></span>&nbsp;Journal of Physical Chemistry B,&nbsp;<span class="citation_year">2013</span>,&nbsp;<span class="citation_volume">117</span>&nbsp;(46), pp 14302&ndash;14319.</li>
 
</ul>
 
</ul>
 
<ul>
 
<ul>
<li><a href="http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-m-2015-1.pdf">Computational refinements of SHAPE - RNA probing experiments</a>,&nbsp;RW Ochsenreiter, U. Vienna, 2015.</li>
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<li><strong><a href="http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-m-2015-1.pdf">Computational refinements of SHAPE - RNA probing experiments</a></strong>,&nbsp;RW Ochsenreiter, U. Vienna, 2015.</li>
 
</ul>
 
</ul>
 
<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<a href="https://getsatisfaction.com/eternagame/topics/yay-science-writing-about-our-data">Forum review</a></p>
 
<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<a href="https://getsatisfaction.com/eternagame/topics/yay-science-writing-about-our-data">Forum review</a></p>

Latest revision as of 02:47, 11 August 2016

Contents

Eterna Papers

New science

  • Lee, J, Kladwang, W, Lee, M, Cantu, D, Azizyan, M, Kim H., Limpaecher, A., Yoon, S., Treuille, A., Das, R.; EteRNA Participants (2014) RNA design rules from a massive open laboratory Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2122-7.

Developer Blog Intro

Blog review [by Eli Fisker, one player lead author of this paper]

Reviews, perspectives, book chapters

                 Forum review

Methods development

Other work using the Eterna experimental pipeline 

            Forum review

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