Papers: Difference between revisions
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<h2>Eterna Papers</h2> | <h2>Eterna Papers</h2> | ||
<h3 | <h3>New science</h3> | ||
<ul> | <ul> | ||
<li> | <li>Lee, J, Kladwang, W, Lee, M, Cantu, D, Azizyan, M, Kim H., Limpaecher, A., Yoon, S., Treuille, A., Das, R.; EteRNA Participants (2014) <strong>[http://www.pnas.org/content/111/6/2122.full RNA design rules from a massive open laboratory]</strong>,<strong> </strong><span>Proc Natl Acad Sci U S A.</span><span> 2014 Feb 11;111(6):2122-7.</span></li> | ||
</ul> | </ul> | ||
<p style="padding-left: 60px;"> | <p style="padding-left: 60px;">[http://www.eternagame.org/web/news/3741483/ Developer Blog Intro]</p> | ||
<ul> | <ul> | ||
<li>< | <li><strong>[http://www.sciencedirect.com/science/article/pii/S0022283615006567/pdfft?md5=daf763eb099c9caf4efcba982c8f79c0&pid=1-s2.0-S0022283615006567-main.pdf Principles for predicting RNA secondary structure design difficulty]</strong></li> | ||
</ul> | </ul> | ||
<p style="padding-left: 60px;"> | <p style="padding-left: 60px;">[http://www.eternagame.org/web/blog/6546445/ Blog review] [by Eli Fisker, one player lead author of this paper]</p> | ||
<h3>Reviews, perspectives, book chapters</h3> | |||
<h3>Reviews, perspectives book chapters</h3> | |||
<ul> | <ul> | ||
<li>< | <li>Bida, J.P., Das, R.,<strong> [[doi:10.1016/j.sbi.2012.06.003|Squaring theory with practice in RNA design]]</strong>, Current Opinion in Structural Biology, <span>2012 Aug;22(4):457-66.</span></li> | ||
</ul> | </ul> | ||
<p> | <p> [https://forum.eternagame.org/t/eterna-lets-work-on-a-paper-together/1381 Forum review]</p> | ||
< | <h3>Methods development</h3> | ||
<h3>Other work using the Eterna experimental pipeline </h3> | <h3>Other work using the Eterna experimental pipeline </h3> | ||
<ul> | <ul> | ||
<li><span>< | <li><span>Havrila, M., Reblova, K., Zirbel, C.L., Leontis, N.B., Sponer, J., (2013) <strong>[http://pubs.acs.org/doi/abs/10.1021/jp408530w Isosteric And Nonisosteric Base Pairs In RNA Motifs: Molecular Dynamics And Bioinformatics Study Of The Sarcin Ricin Internal Loop]</strong></span>,<span><strong> </strong></span>Journal of Physical Chemistry B, <span class="citation_year">2013</span>, <span class="citation_volume">117</span> (46), pp 14302–14319.</li> | ||
</ul> | </ul> | ||
<ul> | <ul> | ||
<li>< | <li><strong>[http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-m-2015-1.pdf Computational refinements of SHAPE - RNA probing experiments]</strong>, RW Ochsenreiter, U. Vienna, 2015.</li> | ||
</ul> | </ul> | ||
<p> | <p> [https://forum.eternagame.org/t/yay-science-writing-about-our-data/2271 Forum review]</p> | ||
== See also == | |||
<p>[https://eternagame.org/publications List of publications on the Eterna website]</p> | |||
[[Category:Scientific Terminology]] |
Latest revision as of 06:27, 23 June 2022
Eterna Papers
New science
- Lee, J, Kladwang, W, Lee, M, Cantu, D, Azizyan, M, Kim H., Limpaecher, A., Yoon, S., Treuille, A., Das, R.; EteRNA Participants (2014) RNA design rules from a massive open laboratory, Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2122-7.
Blog review [by Eli Fisker, one player lead author of this paper]
Reviews, perspectives, book chapters
- Bida, J.P., Das, R., Squaring theory with practice in RNA design, Current Opinion in Structural Biology, 2012 Aug;22(4):457-66.
Methods development
Other work using the Eterna experimental pipeline
- Havrila, M., Reblova, K., Zirbel, C.L., Leontis, N.B., Sponer, J., (2013) Isosteric And Nonisosteric Base Pairs In RNA Motifs: Molecular Dynamics And Bioinformatics Study Of The Sarcin Ricin Internal Loop, Journal of Physical Chemistry B, 2013, 117 (46), pp 14302–14319.
- Computational refinements of SHAPE - RNA probing experiments, RW Ochsenreiter, U. Vienna, 2015.