Papers: Difference between revisions
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<h2>Eterna Papers</h2> | <h2>Eterna Papers</h2> | ||
< | <h3><span style="font-size: 1.17em;">New science</span></h3> | ||
<ul> | <ul> | ||
<li> | <li>Lee, J, Kladwang, W, Lee, M, Cantu, D, Azizyan, M, Kim H., Limpaecher, A., Yoon, S., Treuille, A., Das, R.; EteRNA Participants (2014) <strong><a href="http://www.pnas.org/content/111/6/2122.full">RNA design rules from a massive open laboratory</a> </strong><span>Proc Natl Acad Sci U S A.</span><span> 2014 Feb 11;111(6):2122-7.</span></li> | ||
</ul> | </ul> | ||
<p style="padding-left: 60px;"><a href=" | <p style="padding-left: 60px;"><a href="http://www.eternagame.org/web/news/3741483/">Developer Blog Intro</a></p> | ||
<ul> | <ul> | ||
<li><a href="http://www. | <li><strong><a href="http://www.sciencedirect.com/science/article/pii/S0022283615006567/pdfft?md5=daf763eb099c9caf4efcba982c8f79c0&pid=1-s2.0-S0022283615006567-main.pdf">Principles for predicting RNA secondary structure design difficulty</a></strong></li> | ||
</ul> | </ul> | ||
<p> | <p style="padding-left: 60px;"><a href="http://www.eternagame.org/web/blog/6546445/">Blog review</a> [by Eli Fisker, one player lead author of this paper]</p> | ||
< | <h3>Reviews, perspectives, book chapters</h3> | ||
< | |||
<ul> | <ul> | ||
<li><a href="http:// | <li>Bida, J.P., Das, R.,<strong> <a href="http://dx.doi.org/10.1016/j.sbi.2012.06.003">Squaring theory with practice in RNA design</a> </strong> Current Opinion in Structural Biology, <span>2012 Aug;22(4):457-66.</span></li> | ||
</ul> | </ul> | ||
<p | <p> <a href="https://getsatisfaction.com/eternagame/topics/eterna_lets_work_on_a_paper_together?topic-reply-list[settings][filter_by]=all&topic-reply-list[settings][reply_id]=9557289#reply_9557289">Forum review</a></p> | ||
<h3>Methods development</h3> | |||
<h3>Other work using the Eterna experimental pipeline </h3> | |||
<ul> | |||
<li><span>Havrila, M., Reblova, K., Zirbel, C.L., Leontis, N.B., Sponer, J., (2013) <strong><a href="http://pubs.acs.org/doi/abs/10.1021/jp408530w">Isosteric And Nonisosteric Base Pairs In RNA Motifs: Molecular Dynamics And Bioinformatics Study Of The Sarcin Ricin Internal Loop</a> </strong></span> Journal of Physical Chemistry B, <span class="citation_year">2013</span>, <span class="citation_volume">117</span> (46), pp 14302–14319.</li> | |||
</ul> | |||
<ul> | |||
<li><strong><a href="http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-m-2015-1.pdf">Computational refinements of SHAPE - RNA probing experiments</a></strong>, RW Ochsenreiter, U. Vienna, 2015.</li> | |||
</ul> | |||
<p> <a href="https://getsatisfaction.com/eternagame/topics/yay-science-writing-about-our-data">Forum review</a></p> |
Revision as of 02:47, 11 August 2016
Eterna Papers
New science
- Lee, J, Kladwang, W, Lee, M, Cantu, D, Azizyan, M, Kim H., Limpaecher, A., Yoon, S., Treuille, A., Das, R.; EteRNA Participants (2014) <a href="http://www.pnas.org/content/111/6/2122.full">RNA design rules from a massive open laboratory</a> Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2122-7.
<a href="http://www.eternagame.org/web/news/3741483/">Developer Blog Intro</a>
- <a href="http://www.sciencedirect.com/science/article/pii/S0022283615006567/pdfft?md5=daf763eb099c9caf4efcba982c8f79c0&pid=1-s2.0-S0022283615006567-main.pdf">Principles for predicting RNA secondary structure design difficulty</a>
<a href="http://www.eternagame.org/web/blog/6546445/">Blog review</a> [by Eli Fisker, one player lead author of this paper]
Reviews, perspectives, book chapters
- Bida, J.P., Das, R., <a href="http://dx.doi.org/10.1016/j.sbi.2012.06.003">Squaring theory with practice in RNA design</a> Current Opinion in Structural Biology, 2012 Aug;22(4):457-66.
<a href="https://getsatisfaction.com/eternagame/topics/eterna_lets_work_on_a_paper_together?topic-reply-list[settings][filter_by]=all&topic-reply-list[settings][reply_id]=9557289#reply_9557289">Forum review</a>
Methods development
Other work using the Eterna experimental pipeline
- Havrila, M., Reblova, K., Zirbel, C.L., Leontis, N.B., Sponer, J., (2013) <a href="http://pubs.acs.org/doi/abs/10.1021/jp408530w">Isosteric And Nonisosteric Base Pairs In RNA Motifs: Molecular Dynamics And Bioinformatics Study Of The Sarcin Ricin Internal Loop</a> Journal of Physical Chemistry B, 2013, 117 (46), pp 14302–14319.
- <a href="http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-m-2015-1.pdf">Computational refinements of SHAPE - RNA probing experiments</a>, RW Ochsenreiter, U. Vienna, 2015.
<a href="https://getsatisfaction.com/eternagame/topics/yay-science-writing-about-our-data">Forum review</a>