Online Databases
From Eterna Wiki
Secondary Structure
see List of Secondary Structure Databases
Tertiary Structure
- RCSB PDB (Protein Data Bank @ Research Collaboratory for Structural Bioinformatics)
- NDB (Nucleic acid DataBase)
Motifs
- RNA CoSSMos (RNA Characterization of Secondary Structure Motifs) allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.
- RNA 3D Hub
- SCOR (Structural Classification of RNA)
Basic Structural Elements
- BPS (database of RNA base pairs)
- RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)
- RNA Basepair Families