Online Databases: Difference between revisions
From Eterna Wiki
ElNando888 (talk | contribs) mNo edit summary |
m (Updated links) |
||
| Line 11: | Line 11: | ||
<h2>Motifs</h2> | <h2>Motifs</h2> | ||
<ul> | <ul> | ||
<li>[http:// | <li>[http://rnacossmos.com RNA CoSSMos (RNA Characterization of Secondary Structure Motifs)] allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.</li> | ||
<li>[http://rna.bgsu.edu/rna3dhub/ RNA 3D Hub]</li> | <li>[http://rna.bgsu.edu/rna3dhub/ RNA 3D Hub]</li> | ||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
<h2>Basic Structural Elements</h2> | <h2>Basic Structural Elements</h2> | ||
<ul> | <ul> | ||
<li>[http://rnafrabase.ibch.poznan.pl/ RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)]</li> | <li>[http://rnafrabase.ibch.poznan.pl/ RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)]</li> | ||
<li>[http://rna.bgsu.edu/FR3D/basepairs/BPfamilies.php RNA Basepair Families]</li> | <li>[http://rna.bgsu.edu/FR3D/basepairs/BPfamilies.php RNA Basepair Families]</li> | ||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
<p>[[Category:Computational Tools]]</p> | <p>[[Category:Computational Tools]]</p> | ||
Latest revision as of 18:51, 27 January 2021
Secondary Structure
see List of Secondary Structure Databases
Tertiary Structure
- RCSB PDB (Protein Data Bank @ Research Collaboratory for Structural Bioinformatics)
- NDB (Nucleic acid DataBase)
Motifs
- RNA CoSSMos (RNA Characterization of Secondary Structure Motifs) allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.
- RNA 3D Hub
Basic Structural Elements
