Online Databases: Difference between revisions
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<li>[http://cossmos.slu.edu/ RNA CoSSMos (RNA Characterization of Secondary Structure Motifs)] allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.</li> | <li>[http://cossmos.slu.edu/ RNA CoSSMos (RNA Characterization of Secondary Structure Motifs)] allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.</li> | ||
<li>[http://rna.bgsu.edu/rna3dhub/ RNA 3D Hub]</li> | <li>[http://rna.bgsu.edu/rna3dhub/ RNA 3D Hub]</li> | ||
<li>[http://scor.berkeley.edu/scor.html SCOR (Structural Classification of RNA)]</li> | <li><span style="text-decoration: line-through;">[http://scor.berkeley.edu/scor.html SCOR (Structural Classification of RNA)]</span> (dead, probably definitely)</li> | ||
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Revision as of 13:56, 10 October 2013
Secondary Structure
see List of Secondary Structure Databases
Tertiary Structure
- RCSB PDB (Protein Data Bank @ Research Collaboratory for Structural Bioinformatics)
- NDB (Nucleic acid DataBase)
Motifs
- RNA CoSSMos (RNA Characterization of Secondary Structure Motifs) allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.
- RNA 3D Hub
- SCOR (Structural Classification of RNA) (dead, probably definitely)
Basic Structural Elements
- BPS (database of RNA base pairs)
- RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)
- RNA Basepair Families
See also
- Bioinformatics Links Directory a large collection of classified links