Online Databases: Difference between revisions
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<h2>Basic | <h2>Basic Structural Elements</h2> | ||
<ul> | <ul> | ||
<li>[http://bps.rutgers.edu/bps/ BPS (<span>database of RNA base pairs</span>)]</li> | <li>[http://bps.rutgers.edu/bps/ BPS (<span>database of RNA base pairs</span>)]</li> | ||
<li>[http://rnafrabase.ibch.poznan.pl/ RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)]</li> | <li>[http://rnafrabase.ibch.poznan.pl/ RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)]</li> | ||
<li>[http://rna.bgsu.edu/FR3D/basepairs/BPfamilies.php RNA Basepair Families]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
<p>[[Category:Computational Tools]]</p> | <p>[[Category:Computational Tools]]</p> | ||
Revision as of 08:16, 16 July 2013
Secondary Structure
see List of Secondary Structure Databases
Tertiary Structure
- RCSB PDB (Protein Data Bank @ Research Collaboratory for Structural Bioinformatics)
- NDB (Nucleic acid DataBase)
Motifs
- RNA CoSSMos (RNA Characterization of Secondary Structure Motifs) allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.
- RNA 3D Hub
- SCOR (Structural Classification of RNA)
Basic Structural Elements
- BPS (database of RNA base pairs)
- RNA FRABASE 2.0 (RNA FRAgments search engine & dataBASE)
- RNA Basepair Families
