List of Eterna Labs

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Revision as of 22:38, 4 August 2013 by Omei (talk | contribs) (Create list of labs with id, for indexing by search engines)
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List of Past EteRNA Labs

The primary purpose of putting this list here is to act as a source for indexing, so that lab IDs can be found using any major search engine.

This list is current as of 8/04/13.  As new labs get synthesized, an up-to-date list can be generated at <a href="http://eterna.cmu.edu/web/script/3189529/">http://eterna.cmu.edu/web/script/3189529/</a>

<tbody> </tbody>
Lab NameLab ID
"Magic" boosts in 2-2 loops 2858870
"Sea Turtle" for New Players 1961835
"The Thinker" for new players 1029219
1-1-1-1-1-1 Multiloop 2867121
1-X bulge testing by Omei 2712699
2-2 and 3-3 loops 2858381
A tilted picture of running man 452127
Alive and kicking by Eli Fisker 2426172
An Arm and a Leg 1.0 by kcabral28 2712695
Anchor 2.0 by ribonucleic 2426169
A-U Closing Base Pairs 2870560
A-U Closing Base Pairs 2 2885535
Ball & Chain by Krobar 2712495
Bends and Ends Sampler 444718
Bistable 3 by jnicol 2426156
Bound state has a zigzag by stevetclark 2426186
Can We do it in 10? - FMN Switch 2.0 2902450
Chalk Outline 502447
Chicken leg 3069182
Chicken leg - Splayed 3069216
Chirality by kcabral28 2426187
Cloud Lab 1 - Aires by wateronthemoon 2333227
Cloud Lab 10 - Random Shape 2 by ElNando888 2333374
Cloud Lab 11 - Little bug by JR 2333380
Cloud Lab 12 - Anchor by ribonucleic 2333386
Cloud Lab 13 - Alien Party Glasses by Jennifer Pearl 2333400
Cloud Lab 14 - Easy loop sizes by Edward Lane 2333407
Cloud Lab 15 - Triloop Buffet by jandersonlee 2333413
Cloud Lab 16 - Section from lab Water Strider by Brourd 2333418
Cloud Lab 17 - Oryza sativa 8 Elements Part 2 by merryskies 2333426
Cloud Lab 18 - Anaconda About to Poop by SpaceFolder 2333432
Cloud Lab 19 - Big Hairpin Loop by Eli Fisker 2333436
Cloud Lab 2 - Triangle of doom version 2 by dstea 2333238
Cloud Lab 20 - Random 4 by mat747 2333440
Cloud Lab 3 - A Simple Zigzag by janelle 2333267
Cloud Lab 4 - Random by theravin 2333298
Cloud Lab 5 - The Nonesuch by rnjensen45 2333307
Cloud Lab 6 - Cross by firedrake969 2333331
Cloud Lab 7 - 5 Fold Radial Asymmetrical Starfish Level 0 by Jieux 2333338
Cloud Lab 8 - Stellar Crossbow by jmf028 2333352
Cloud Lab 9 - Final Countdown by Tesla'sDisciple 2333366
Day 2 by wateronthemoon 2426170
EzFold by space_miser 2712700
FMN Apatamer with single binding site 669347
FMN Aptamer 2.0 1420804
FMN Aptamer with Single Binding Site II 741980
FMN Binding Branches 809077
FMN Binding Shapes 2284109
FMN Binding Site Chemical Footprint 3004909
FMN Switch 2.0 1656855
FMN Switch 2.0 - First State with Locked Bases 2902365
FMN-RNA Aptamer Complex 633803
Frog leg - Electric 3050597
G-U Closing Base Pairs 2912544
G-U Closing Base Pairs 2 2912625
Hair Trigger by space_miser 2426157
Hand and Finger 2058825
Hex-a-Stripe 2857497
Huffman by hotcreek 2712696
Intrinsically unfolded RNA 3096140
Kudzu 497237
LabPuz02 by JR 2426149
Laydown and Jump by rnjensen45 2426174
Lines by starryjess 2426184
Lonely Base Pair - 1-1: Multiloop 2901040
Lonely Base Pair - 2-2: Multiloop 2901112
Lonely Base Pair - 3-3: Multiloop 2902287
LS2 by c-quence 2426167
Magic boosts in 2-2 loops revised, thanks starry 2866861
Making it up as I go 525133
McSwitch by Meechl 2426177
Modeled Impossible: 1 Nucleotide Bulge/Triloop Lonely base pair V1 3009949
Modeled Impossible: 31+ Nucleotide Internal Loops 2995652
Motor Protein - Step 1 3071343
Motor Protein - Step 2 3071352
Motor Protein - Step 3 3071367
My Screw-Up Corrected? by SpaceFolder 2426179
New Frontier 3018497
Nincompoop by hoglahoo 2426180
Phase II - 1 by ElNando888 2426165
Probing for tertiary structure 2979438
Probing the structure of poly-A loops by mutation 3096369
Project : Chesterfield's-The Mousekateer 733183
Project : 2-2 loop 731919
Project : 3 single nucleotide bulges 752198
Project : 30 Nucleotide Loop 1 - Symmetric Internal Loop 742007
Project : 30 Nucleotide Loop 2 - Asymmetric Internal Loop 742017
Project : 30 Nucleotide Loop 3 - Bulge Internal Loop 742033
Project : 3-4 and 1-2 loops 749007
Project : 4-4 loop 732250
Project : 4-4 loop 732244
Project : Adenine Reduction 736657
Project : All red and blue 739592
Project : Alternative Mismatches 736666
Project : Back to Basics - Triloop 733012
Project : Bulge Sampler: 1-nt 753286
Project : Bulge Sampler: 2-nt 753290
Project : Bulge Sampler: 3-nt 753292
Project : Bulge Sampler: 4-nt 753294
Project : Bulge test 737926
Project : Bulge: 1-nt, 3' 753271
Project : Bulge: 1-nt, 5' 753273
Project : chain lengh an loop size series 1-3 748645
Project : chain length and loop size series 1-1 748630
Project : Chain length and loop size series 1-10 748683
Project : chain length and loop size series 1-2 748641
Project : chain length and loop size series 1-4 748660
Project : chain length and loop size series 1-5 748665
Project : chain length and loop size series 1-6 748668
Project : chain length and loop size series 1-7 748673
Project : chain length and loop size series 1-8 748677
Project : chain lenth and loop size series 1-9 748681
Project : comparison series: 747257
Project : comparison series: 747253
Project : comparison series: 10-10 747268
Project : comparison series: 10-15 747340
Project : comparison series: 10-2 749547
Project : comparison series: 1-1 747248
Project : comparison series: 11-11 747272
Project : comparison series: 11-15 747337
Project : comparison series: 1-15 747361
Project : comparison series: 12-12 747274
Project : comparison series: 12-15 747335
Project : comparison series: 13-13 747276
Project : comparison series: 13-15 747333
Project : comparison series: 14-14 747278
Project : comparison series: 14-15 747330
Project : comparison series: 15-1 747328
Project : comparison series: 15-10 747305
Project : comparison series: 15-11 747301
Project : comparison series: 15-12 747299
Project : comparison series: 15-13 747297
Project : comparison series: 15-14 747295
Project : comparison series: 15-15 747280
Project : comparison series: 15-2 747326
Project : comparison series: 15-3 747324
Project : comparison series: 15-4 747321
Project : comparison series: 15-5 747316
Project : comparison series: 15-6 747314
Project : comparison series: 15-7 747312
Project : comparison series: 15-8 747310
Project : comparison series: 15-9 747307
Project : comparison series: 2-10 749800
Project : comparison series: 2-15 747358
Project : comparison series: 2-2 747251
Project : comparison series: 2-3 749769
Project : comparison series: 2-4 749772
Project : comparison series: 2-5 749777
Project : comparison series: 2-6 749780
Project : comparison series: 2-7 749785
Project : comparison series: 2-8 749791
Project : comparison series: 2-9 749795
Project : comparison series: 3-15 747356
Project : comparison series: 4-15 747354
Project : comparison series: 4-2 749529
Project : comparison series: 4-4 747255
Project : comparison series: 5-15 747351
Project : comparison series: 5-2 749531
Project : comparison series: 6-15 747349
Project : comparison series: 6-2 749534
Project : comparison series: 6-6 747259
Project : comparison series: 7-15 747347
Project : comparison series: 7-2 749538
Project : comparison series: 7-7 747261
Project : comparison series: 8-15 747344
Project : comparison series: 8-2 749541
Project : comparison series: 8-8 747264
Project : comparison series: 9-15 747342
Project : comparison series: 9-2 749543
Project : comparison series: 9-9 747266
Project : comparison series: Decaloops 749289
Project : comparison series: Hairpin loop with 11 nts 749345
Project : comparison series: Hairpin loop with 12 nts 749351
Project : comparison series: Hairpin loop with 13 nts 749354
Project : comparison series: Hairpin loop with 14 nts 749391
Project : comparison series: Hairpin loop with 15 nts 749395
Project : comparison series: Heptaloop 749251
Project : comparison series: Hexaloop 749248
Project : comparison series: Nonaloops 749287
Project : comparison series: Octaloops 749285
Project : comparison series: Pentaloop 749243
Project : comparison series: Triloop 749240
Project : Crossroads test 749788
Project : Cytosine reduction 732690
Project : Example project 730163
Project : Example project 2 730633
Project : External Loop: 2 Stacks Separated by Unpaired Bases 749194
Project : Fisker - 2-2 loop energy challenge 749627
Project : Five Branch Multiloop 749305
Project : FMN-RNA aptamer complex lab 735122
Project : Fractal RNA 732526
Project : Guanine Reduction 737911
Project : GU-pin shape test 750309
Project : Hairpins: Heptaloop 734484
Project : Hairpins: Hexaloop 734420
Project : Hairpins: Pentaloop 734397
Project : Hairpins: Tetraloop 734367
Project : Hairpins: Triloop 734313
Project : Half of The Branches 742148
Project : Hard Lab Fragments: Kudzu Arm 756204
Project : Hard Lab Fragments: Kudzu Neck 756202
Project : Hard Lab Fragments: Making it Up As I Go Multiloop 756200
Project : Hard Lab Fragments: Water Strider Arm 756184
Project : Hooked 732746
Project : Internal Loops: 5-2 736629
Project : Internal Loops: 6-3 736621
Project : Inward folding RNA 745689
Project : Isolated Base Pairs: 2-2 Loops Adjacent to Multiloop 751858
Project : Isolated Base Pairs: Adjacent 2-1 Loops (1) 751755
Project : Isolated Base Pairs: Adjacent 2-1 Loops (2) 751749
Project : Isolated Base Pairs: Adjacent 2-1 Loops (3) 751747
Project : Isolated Base Pairs: Adjacent 2-1-Loops (4) 751745
Project : Isolated Closing Pairs 1 732331
Project : Isolated Closing Pairs 2 732459
Project : Isolated Closing Pairs 3 736777
Project : JerryP's winning design without tetraloop boost 732135
Project : Lab design for newer players 745302
Project : Large Isolated Hairpin 736891
Project : Large Loop 732774
Project : Loop Heavy 732656
Project : Mat - comparison series: 3-2 - D1 749524
Project : Mat - comparison series: Hairpin loop with 10 nts 749341
Project : Mat - comparison series: Hairpin loop with 9 nts- D1 749339
Project : Multiloop Isolated Closing Pairs 732707
Project : Multiloop: 3 Branches Unevenly Spaced (1) 749087
Project : Multiloop: 3 Branches Unevenly Spaced (2) 749092
Project : Multiloop: 3 Branches, 12 Unpaired Bases 749073
Project : Multiloop: 3 Branches, 12 Unpaired Bases 749065
Project : Multiloop: 3 Branches, No Unpaired Bases 749037
Project : Multiloop: 3 Branches, No Unpaired Bases 749026
Project : Multiloop: 4 Branches Separated by Single Unpaired Bases 749204
Project : Multiloop: Two Pairs of Adjacent Stacks 759582
Project : Neck Length 2 - 4 branch multiloop 753466
Project : Nupack's Finger Revisited 733019
Project : Plain Hooked 733062
Project : Pseudoknot 1: Minimal 743640
Project : Pseudoknot 2: Biotin-Binding Pseudoknot 743716
Project : Repetitive Structures 732432
Project : Reshiram, Zekrom, Kyurem 740265
Project : S&E5 740434
Project : S&E5 Modified 740441
Project : Saccharomyces Cerevisiae Loop Structure 742130
Project : Sample puzzle for lab 745297
Project : Shape Test 1 759611
Project : Sharklike V-1 (SHAPE data Exp-1) 741941
Project : Sharklike V-2 (SHAPE data Exp-2) 741978
Project : test 738113
Project : test 738110
Project : test 732084
Project : test 730215
Project : Test Loop 752194
Project : Test of RNAfold (1) 759658
Project : Test of RNAfold (2) 759671
Project : Test of RNAfold (3) 759687
Project : Test of RNAfold (4) 759697
Project : Test of RNAfold (5) 759733
Project : test project 1 (to be deleted) 733994
Project : test project 2 (to be deleted) 733996
Project : test project 3 (to be deleted) 733999
Project : Testing various loop designs 757965
Project : Testing various loop designs 757949
Project : Testing various loop designs 757946
Project : Testing various loop designs 757944
Project : Testing various loop designs 757937
Project : Thicker Zigzag 765769
Project : Tobramycin Aptamer 734520
Project : Two bulges and a 1-2 loop (reverse) 742020
Project : Two stacks 745306
Project : Uracil Reduction 737900
Project : Zigzag: 1-Nucleotide Bulge (1) 751716
Project : Zigzag: 1-Nucleotide Bulge (2) 751722
Project : Zigzag: 1-Nucleotide Bulge (3) 751732
Project : Zigzag: 1-Nucleotide Bulge (4) 751735
QRNAL0 by Quxwozing 2712697
Quad Loop test 2866690
Reversed G-C Multibranch Loop Closing Base Pairs 2923716
Riboswitch-based by jruaya 2712698
RNA Bridge 2857484
RNA Bridge (Updated) 2857506
RNA Strength 2864764
SARS coronavirus structure test 3001596
Shape Library 101: The Finger 17320
Shape Library 102 : The Cross 24153
Shape Library 103 : One Bulge Cross 26603
Shape Library 104 : The Star 321468
Shape Library 201 : Bulged Star 382268
Shape Library 202 : The Branches 405631
Shape Library 203 : The Asymmetry 437822
Shape Test 507875
Short Stacks 2858258
Short Stacks 2 2952029
Simple RNA Switch 885046
Simplify by Tesla'sDisciple 2712505
Single state - Switch state 2860144
Single to Switch try #2 2868155
Stratospheric by Dennis9600 2426163
Switch Test 1 by Brourd 2426188
TEBOWNED mutation - B 2832708
TEBOWNED mutation - BH 2830643
TEBOWNED mutation - U 2832704
Tetraloops and 0-0-0-0 Multiloop Phase 1 2892143
Tetraloops and 0-0-0-0 Multiloop Phase 1 Version 2 2892167
The Backwards C 535658
The GAAA loop 2857430
Theophylline Ribozyme Switch (5-0) 2390140
Things to Test 465127
Thursday by DHammond 2712701
Tighter Two Stacks for 3-way Multi-Loop testing 2858145
Top Notch by jmf028 2426190
Tribute To Satellite Kepler 2857963
Triloop with multiloop core phase 1 2904908
Two Bulge "Zigzag" - Variation 1 2905171
Two Bulge "Zigzag" - Variation 3 2905285
Two Bulge "Zigzag" - Variation 4 2905333
Two stacks 2857457
Two Stacks - Triloop hairpin variation 2859551
Variations on a theme of 1-0 loops and short stack hairpins 2870311
Water Snake Redux by jruaya 2426178
Water Strider 479426
Will It Bind? by jmf028 2426160
ZigZag and ZagZig 3065243