Difference between revisions of "List of EteRNA Labs"

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<h2>List of Past EteRNA Labs</h2>
 
<h2>List of Past EteRNA Labs</h2>
 
<p>The primary purpose of putting this list here is to act as a source for indexing, so that lab IDs can be found using any major search engine.</p>
 
<p>The primary purpose of putting this list here is to act as a source for indexing, so that lab IDs can be found using any major search engine.</p>
<p>This list is current as of 7/05/14.&nbsp; As new labs get synthesized, an up-to-date list can be generated at <a href="http://eterna.cmu.edu/web/script/4805182/">http://eterna.cmu.edu/web/script/4805182/</a>.</p>
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<p>This list was updated on 7/05/14, using the script <a href="http://eterna.cmu.edu/web/script/4805182/">http://eterna.cmu.edu/web/script/4805182/</a>.&nbsp; However, the [[API_for_Server_Data_Queries|data API]] used (type=labs) has been deprecated and new labs are not being added.&nbsp; To get all labs, the script will have to be changed to use the type=projects query.</p>
 
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<table>
 
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Latest revision as of 17:58, 11 July 2014

List of Past EteRNA Labs

The primary purpose of putting this list here is to act as a source for indexing, so that lab IDs can be found using any major search engine.

This list was updated on 7/05/14, using the script http://eterna.cmu.edu/web/script/4805182/.  However, the data API used (type=labs) has been deprecated and new labs are not being added.  To get all labs, the script will have to be changed to use the type=projects query.

Lab NameLab IDNum SynthThumbnail
"Magic" boosts in 2-2 loops 2858870 40
"Sea Turtle" for New Players 1961835 16
"The Thinker" for new players 1029219 14
1-1-1-1-1-1 Multiloop 2867121 40
1-X bulge testing by Omei 2712699 45
2-2 and 3-3 loops 2858381 40
A codon riboswitch 3230283 0
A tilted picture of running man 452127 35
Adding some sweet tetraloops 3131787 80
Alive and kicking by Eli Fisker 2426172 40
An Arm and a Leg 1.0 by kcabral28 2712695 45
Anchor 2.0 by ribonucleic 2426169 40
A-U Closing Base Pairs 2870560 80
A-U Closing Base Pairs 2 2885535 80
Ball & Chain by Krobar 2712495 45
Bends and Ends Sampler 444718 20
Bistable 3 by jnicol 2426156 40
Bound state has a zigzag by stevetclark 2426186 40
Can We do it in 10? - FMN Switch 2.0 2902450 10
Chalk Outline 502447 23
Chicken leg 3069182 40
Chicken leg - Splayed 3069216 40
Chirality by kcabral28 2426187 40
Class I ligase 3280109 0
Cloud Lab 1 - Aires by wateronthemoon 2333227 158
Cloud Lab 10 - Random Shape 2 by ElNando888 2333374 134
Cloud Lab 11 - Little bug by JR 2333380 131
Cloud Lab 12 - Anchor by ribonucleic 2333386 141
Cloud Lab 13 - Alien Party Glasses by Jennifer Pearl 2333400 138
Cloud Lab 14 - Easy loop sizes by Edward Lane 2333407 125
Cloud Lab 15 - Triloop Buffet by jandersonlee 2333413 135
Cloud Lab 16 - Section from lab Water Strider by Brourd 2333418 132
Cloud Lab 17 - Oryza sativa 8 Elements Part 2 by merryskies 2333426 143
Cloud Lab 18 - Anaconda About to Poop by SpaceFolder 2333432 151
Cloud Lab 19 - Big Hairpin Loop by Eli Fisker 2333436 150
Cloud Lab 2 - Triangle of doom version 2 by dstea 2333238 144
Cloud Lab 20 - Random 4 by mat747 2333440 165
Cloud Lab 3 - A Simple Zigzag by janelle 2333267 139
Cloud Lab 4 - Random by theravin 2333298 127
Cloud Lab 5 - The Nonesuch by rnjensen45 2333307 129
Cloud Lab 6 - Cross by firedrake969 2333331 136
Cloud Lab 7 - 5 Fold Radial Asymmetrical Starfish Level 0 by Jieux 2333338 128
Cloud Lab 8 - Stellar Crossbow by jmf028 2333352 131
Cloud Lab 9 - Final Countdown by Tesla'sDisciple 2333366 131
Codon riboswitch [arginine] 3279019 0
Codon riboswitch [histidine] 3282859 0
Codon riboswitch [repeat of tryptophan] 3278916 0
Could Curves Survive? 3130051 60
crRNA 3272668 0
Day 2 by wateronthemoon 2426170 40
Dimer A 3183259 80
Dimer B 3183257 80
EteRNA R43 the Backwards C 3281145 0
EteRNA R45-46 FMN Aptamer with Single Binding Site 3281090 0
EzFold by space_miser 2712700 45
Find Z - Here It Is! 2895179 80
Five Adjacent Stem Multibranch Loop 3215320 60
FMN Apatamer with single binding site 669347 31
FMN Aptamer 2.0 1420804 31
FMN Aptamer with Single Binding Site II 741980 36
FMN Binding Branches 809077 28
FMN Binding Shapes 2284109 16
FMN Binding Site Chemical Footprint 3004909 60
FMN Switch 2.0 1656855 72
FMN Switch 2.0 - First State with Locked Bases 2902365 40
FMN-RNA Aptamer Complex 633803 16
Frog leg - Electric 3050597 80
Frog leg - relaxed 3050576 80
Frog leg - Stretched toe 3052851 80
G-U Closing Base Pairs 2912544 80
G-U Closing Base Pairs 2 2912625 80
Hair Trigger by space_miser 2426157 40
Hand and Finger 2058825 16
Hex-a-Stripe 2857497 40
Huffman by hotcreek 2712696 45
Intersecting stacks 2 3080577 30
Intersecting stacks investigation 3080569 30
Intrinsically unfolded RNA 3096140 40
Is RNA directional 1 of 2 3087982 40
Is RNA directional 2 of 2 3087983 40
Kudzu 497237 24
LabPuz02 by JR 2426149 40
Laydown and Jump by rnjensen45 2426174 40
Lines by starryjess 2426184 40
Location Dependent Chemical Footprints Part 1 3104856 80
Location Dependent Chemical Footprints Part 2 3104964 80
Location Dependent Chemical Footprints Part 3 3104994 80
Location Dependent Chemical Footprints Part 4 3105062 40
Location Dependent Chemical Footprints Part 5 3105090 40
Location Dependent Chemical Footprints Part 6 3105122 40
Lonely Base Pair - 1-1: Multiloop 2901040 30
Lonely Base Pair - 2-2: Multiloop 2901112 30
Lonely Base Pair - 3-3: Multiloop 2902287 30
LS2 by c-quence 2426167 40
Magic boosts in 2-2 loops revised, thanks starry 2866861 40
Making it up as I go 525133 24
McSwitch by Meechl 2426177 40
MedLoop resurrected 3280395 0
Modeled Impossible: 1 Nucleotide Bulge/Triloop Lonely base pair V1 3009949 60
Modeled Impossible: 1 Nucleotide Bulge/Triloop Lonely base pair V2 3009955 30
Modeled Impossible: 31+ Nucleotide Internal Loops 2995652 80
Motor Protein - Step 1 3071343 80
Motor Protein - Step 2 3071352 80
Motor Protein - Step 3 3071367 80
M-stable 3280580 0
My Screw-Up Corrected? by SpaceFolder 2426179 40
New Frontier 3018497 60
New Frontier 2 3213788 40
Nincompoop by hoglahoo 2426180 40
P5abc Mutants to Affect Folding Transitions 3191093 0
Palindromes part one 3153250 40
Phase II - 1 by ElNando888 2426165 40
Probing for tertiary structure 2979438 60
Probing the structure of poly-A loops by mutation 3096369 40
Project : Chesterfield's-The Mousekateer 733183 11
Project : 2-2 loop 731919 18
Project : 3 single nucleotide bulges 752198 0
Project : 30 Nucleotide Loop 1 - Symmetric Internal Loop 742007 0
Project : 30 Nucleotide Loop 2 - Asymmetric Internal Loop 742017 0
Project : 30 Nucleotide Loop 3 - Bulge Internal Loop 742033 0
Project : 3-4 and 1-2 loops 749007 0
Project : 4-4 loop 732250 13
Project : 4-4 loop 732244 0
Project : Adenine Reduction 736657 0
Project : All red and blue 739592 0
Project : Alternative Mismatches 736666 0
Project : Back to Basics - Triloop 733012 0
Project : Bulge Sampler: 1-nt 753286 5
Project : Bulge Sampler: 2-nt 753290 4
Project : Bulge Sampler: 3-nt 753292 7
Project : Bulge Sampler: 4-nt 753294 0
Project : Bulge test 737926 0
Project : Bulge: 1-nt, 3' 753271 0
Project : Bulge: 1-nt, 5' 753273 0
Project : chain lengh an loop size series 1-3 748645 3
Project : chain length and loop size series 1-1 748630 0
Project : Chain length and loop size series 1-10 748683 8
Project : chain length and loop size series 1-2 748641 0
Project : chain length and loop size series 1-4 748660 3
Project : chain length and loop size series 1-5 748665 0
Project : chain length and loop size series 1-6 748668 0
Project : chain length and loop size series 1-7 748673 0
Project : chain length and loop size series 1-8 748677 3
Project : chain lenth and loop size series 1-9 748681 5
Project : comparison series: 747257 14
Project : comparison series: 747253 15
Project : comparison series: 10-10 747268 9
Project : comparison series: 10-15 747340 10
Project : comparison series: 10-2 749547 9
Project : comparison series: 1-1 747248 19
Project : comparison series: 11-11 747272 10
Project : comparison series: 11-15 747337 10
Project : comparison series: 1-15 747361 18
Project : comparison series: 12-12 747274 7
Project : comparison series: 12-15 747335 11
Project : comparison series: 13-13 747276 7
Project : comparison series: 13-15 747333 10
Project : comparison series: 14-14 747278 7
Project : comparison series: 14-15 747330 10
Project : comparison series: 15-1 747328 13
Project : comparison series: 15-10 747305 8
Project : comparison series: 15-11 747301 7
Project : comparison series: 15-12 747299 7
Project : comparison series: 15-13 747297 7
Project : comparison series: 15-14 747295 8
Project : comparison series: 15-15 747280 0
Project : comparison series: 15-2 747326 12
Project : comparison series: 15-3 747324 8
Project : comparison series: 15-4 747321 11
Project : comparison series: 15-5 747316 8
Project : comparison series: 15-6 747314 8
Project : comparison series: 15-7 747312 8
Project : comparison series: 15-8 747310 8
Project : comparison series: 15-9 747307 8
Project : comparison series: 2-10 749800 12
Project : comparison series: 2-15 747358 16
Project : comparison series: 2-2 747251 16
Project : comparison series: 2-3 749769 8
Project : comparison series: 2-4 749772 10
Project : comparison series: 2-5 749777 7
Project : comparison series: 2-6 749780 8
Project : comparison series: 2-7 749785 8
Project : comparison series: 2-8 749791 11
Project : comparison series: 2-9 749795 11
Project : comparison series: 3-15 747356 17
Project : comparison series: 4-15 747354 11
Project : comparison series: 4-2 749529 8
Project : comparison series: 4-4 747255 15
Project : comparison series: 5-15 747351 14
Project : comparison series: 5-2 749531 8
Project : comparison series: 6-15 747349 13
Project : comparison series: 6-2 749534 8
Project : comparison series: 6-6 747259 13
Project : comparison series: 7-15 747347 10
Project : comparison series: 7-2 749538 9
Project : comparison series: 7-7 747261 14
Project : comparison series: 8-15 747344 10
Project : comparison series: 8-2 749541 10
Project : comparison series: 8-8 747264 7
Project : comparison series: 9-15 747342 10
Project : comparison series: 9-2 749543 9
Project : comparison series: 9-9 747266 7
Project : comparison series: Decaloops 749289 0
Project : comparison series: Hairpin loop with 11 nts 749345 9
Project : comparison series: Hairpin loop with 12 nts 749351 9
Project : comparison series: Hairpin loop with 13 nts 749354 8
Project : comparison series: Hairpin loop with 14 nts 749391 9
Project : comparison series: Hairpin loop with 15 nts 749395 9
Project : comparison series: Heptaloop 749251 11
Project : comparison series: Hexaloop 749248 12
Project : comparison series: Nonaloops 749287 0
Project : comparison series: Octaloops 749285 8
Project : comparison series: Pentaloop 749243 11
Project : Crossroads test 749788 15
Project : Cytosine reduction 732690 0
Project : Example project 730163 28
Project : Example project 2 730633 12
Project : External Loop: 2 Stacks Separated by Unpaired Bases 749194 0
Project : Fisker - 2-2 loop energy challenge 749627 16
Project : Five Branch Multiloop 749305 0
Project : FMN-RNA aptamer complex lab 735122 10
Project : Fractal RNA 732526 4
Project : Guanine Reduction 737911 0
Project : GU-pin shape test 750309 10
Project : Hairpins: Heptaloop 734484 11
Project : Hairpins: Hexaloop 734420 10
Project : Hairpins: Pentaloop 734397 8
Project : Hairpins: Tetraloop 734367 13
Project : Hairpins: Triloop 734313 16
Project : Half of The Branches 742148 10
Project : Hard Lab Fragments: Kudzu Arm 756204 11
Project : Hard Lab Fragments: Kudzu Neck 756202 5
Project : Hard Lab Fragments: Making it Up As I Go Multiloop 756200 7
Project : Hard Lab Fragments: Water Strider Arm 756184 6
Project : Hooked 732746 0
Project : Internal Loops: 5-2 736629 15
Project : Internal Loops: 6-3 736621 7
Project : Inward folding RNA 745689 0
Project : Isolated Base Pairs: 2-2 Loops Adjacent to Multiloop 751858 5
Project : Isolated Base Pairs: Adjacent 2-1 Loops (1) 751755 7
Project : Isolated Base Pairs: Adjacent 2-1 Loops (2) 751749 0
Project : Isolated Base Pairs: Adjacent 2-1 Loops (3) 751747 3
Project : Isolated Base Pairs: Adjacent 2-1-Loops (4) 751745 7
Project : Isolated Closing Pairs 1 732331 0
Project : Isolated Closing Pairs 2 732459 8
Project : Isolated Closing Pairs 3 736777 7
Project : JerryP's winning design without tetraloop boost 732135 9
Project : Lab design for newer players 745302 6
Project : Large Isolated Hairpin 736891 0
Project : Large Loop 732774 0
Project : Loop Heavy 732656 6
Project : Mat - comparison series: 3-2 - D1 749524 8
Project : Mat - comparison series: Hairpin loop with 10 nts 749341 9
Project : Mat - comparison series: Hairpin loop with 9 nts- D1 749339 10
Project : Multiloop Isolated Closing Pairs 732707 0
Project : Multiloop: 3 Branches Unevenly Spaced (1) 749087 12
Project : Multiloop: 3 Branches Unevenly Spaced (2) 749092 9
Project : Multiloop: 3 Branches, 12 Unpaired Bases 749073 12
Project : Multiloop: 3 Branches, 12 Unpaired Bases 749065 0
Project : Multiloop: 3 Branches, No Unpaired Bases 749037 9
Project : Multiloop: 3 Branches, No Unpaired Bases 749026 0
Project : Multiloop: 4 Branches Separated by Single Unpaired Bases 749204 0
Project : Multiloop: Two Pairs of Adjacent Stacks 759582 0
Project : Neck Length 2 - 4 branch multiloop 753466 0
Project : Nupack's Finger Revisited 733019 7
Project : Plain Hooked 733062 7
Project : Pseudoknot 1: Minimal 743640 7
Project : Pseudoknot 2: Biotin-Binding Pseudoknot 743716 11
Project : Repetitive Structures 732432 0
Project : Reshiram, Zekrom, Kyurem 740265 0
Project : S&E5 740434 0
Project : S&E5 Modified 740441 4
Project : Saccharomyces Cerevisiae Loop Structure 742130 0
Project : Sample puzzle for lab 745297 9
Project : Shape Test 1 759611 0
Project : Sharklike V-1 (SHAPE data Exp-1) 741941 5
Project : Sharklike V-2 (SHAPE data Exp-2) 741978 4
Project : test 738113 0
Project : test 738110 0
Project : test 732084 0
Project : test 730215 0
Project : Test Loop 752194 0
Project : Test of RNAfold (1) 759658 0
Project : Test of RNAfold (2) 759671 0
Project : Test of RNAfold (3) 759687 0
Project : Test of RNAfold (4) 759697 0
Project : Test of RNAfold (5) 759733 0
Project : test project 1 (to be deleted) 733994 0
Project : test project 2 (to be deleted) 733996 0
Project : test project 3 (to be deleted) 733999 0
Project : Testing various loop designs 757965 11
Project : Testing various loop designs 757949 0
Project : Testing various loop designs 757946 7
Project : Testing various loop designs 757944 7
Project : Testing various loop designs 757937 5
Project : Thicker Zigzag 765769 21
Project : Tobramycin Aptamer 734520 12
Project : Two bulges and a 1-2 loop (reverse) 742020 3
Project : Two stacks 745306 14
Project : Uracil Reduction 737900 0
Project : Zigzag: 1-Nucleotide Bulge (1) 751716 8
Project : Zigzag: 1-Nucleotide Bulge (2) 751722 7
Project : Zigzag: 1-Nucleotide Bulge (3) 751732 7
Project : Zigzag: 1-Nucleotide Bulge (4) 751735 6
QRNAL0 by Quxwozing 2712697 45
Quad Loop test 2866690 40
Relaxed multiloop 2 3209219 40
Repeat hairpins v1 3276955 0
Reproducibility Lab 1 3293294 0
Reversed G-C Multibranch Loop Closing Base Pairs 2923716 80
Riboswitch-based by jruaya 2712698 45
RNA Bridge 2857484 40
RNA Bridge (Updated) 2857506 40
RNA Strength 2864764 64
Robot serial killer 1 - Lab killer too? 3192762 40
Robot serial killer 2 - Lab killer too? 3192807 40
SARS coronavirus structure test 3001596 40
Semicircle - 4 bends 3102679 40
Semicircle - 3 bends 3102663 40
sgRNA48 3272963 0
sgRNA67 3272880 0
sgRNA89_NGS 3272795 0
Shape Library 101: The Finger 17320 36
Shape Library 102 : The Cross 24153 24
Shape Library 103 : One Bulge Cross 26603 48
Shape Library 104 : The Star 321468 40
Shape Library 201 : Bulged Star 382268 36
Shape Library 202 : The Branches 405631 62
Shape Library 203 : The Asymmetry 437822 32
Shape Test 507875 24
Short Stacks 2858258 40
Short Stacks 2 2952029 40
Short Stacks 3 3195784 48
Simple RNA Switch 885046 123
Simplify by Tesla'sDisciple 2712505 45
Single state - Switch state 2860144 40
Single to Switch try #2 2868155 40
Stratospheric by Dennis9600 2426163 40
Switch Test 1 by Brourd 2426188 40
TEBOWNED mutation - B 2832708 16
TEBOWNED mutation - BH 2830643 16
TEBOWNED mutation - U 2832704 16
Teeny tRNA 3146069 20
Testing 3D structure prediction of G/G mismatches (boosts!) 3230216 0
Testing for crazy conformations of tandem G/A and A/G pairs 3230242 0
Tetraloops and 0-0-0-0 Multiloop Phase 1 2892143 80
Tetraloops and 0-0-0-0 Multiloop Phase 1 Version 2 2892167 80
The Backwards C 535658 27
The GAAA loop 2857430 40
Theophylline Ribozyme Switch (5-0) 2390140 78
Things to Test 465127 35
Thursday by DHammond 2712701 45
Tighter Two Stacks for 3-way Multi-Loop testing 2858145 40
TinkerToy Retread 3021369 80
Top Notch by jmf028 2426190 40
tracrRNA 3272718 0
Tribute To Satellite Kepler 2857963 40
Triloop with multiloop core phase 1 2904908 80
Two Bulge "Zigzag" - Both Conformations 2905080 40
Two Bulge "Zigzag" - Variation 1 2905171 12
Two Bulge "Zigzag" - Variation 2 2905235 12
Two Bulge "Zigzag" - Variation 3 2905285 12
Two Bulge "Zigzag" - Variation 4 2905333 12
Two stacks 2857457 40
Two Stacks - Triloop hairpin variation 2859551 40
Un-stable 3280522 0
Variations on a theme of 1-0 loops and short stack hairpins 2870311 20
Water Snake Redux by jruaya 2426178 40
Water Strider 479426 25
Will It Bind? by jmf028 2426160 40
ZigZag and ZagZig 3065243 60
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