Eterna Dictionary: Difference between revisions
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<p> | __NOTOC__<p></p><table class="toc" style="border-collapse: separate;"><tr> | ||
<table class="toc" | |||
<tr> | |||
<td colspan="7"> | <td colspan="7"> | ||
<div | <div class="toctitle" dir="ltr" lang="en"> | ||
<h2>Contents</h2> | <h2 id="mw-toc-heading">Contents</h2> | ||
</div> | </div> | ||
</td> | </td> | ||
Line 12: | Line 9: | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#A|A]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#B|B]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#C|C]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#D|D]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#E|E]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#F|F]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#G|G]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#H|H]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#I|I]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#J|J]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#K|K]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#L|L]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#M|M]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#N|N]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#O|O]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#P|P]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#Q|Q]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#R|R]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#S|S]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#T|T]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#U|U]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#V|V]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#W|W]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#X|X]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
<td> | <td> | ||
<ul> | <ul> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#Y|Y]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#Z|Z]]</span></li> | ||
<li class="toclevel-1 | <li class="toclevel-1"><span class="toctext">[[#0-9|0-9]]</span></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
</tr> | </tr></table> | ||
<p></p> | |||
</table> | |||
<p> | |||
<h2>A</h2> | <h2>A</h2> | ||
<ul> | <ul> | ||
Line 87: | Line 81: | ||
<li>[[AU Pair]]</li> | <li>[[AU Pair]]</li> | ||
</ul> | </ul> | ||
<h2>B</h2> | <h2>B</h2> | ||
<ul> | <ul> | ||
<li>[[Backbone]]</li> | <li>[[Backbone]]</li> | ||
<li>[[Bacteria]]</li> | <li>[[Bacteria]]</li> | ||
<li>[[Barcode]]</li> | <li>[[Barcode]]</li> | ||
<li>[[Base]]</li> | <li>[[Base]]</li> | ||
Line 98: | Line 90: | ||
<li>[[Base Pair Flipping]]</li> | <li>[[Base Pair Flipping]]</li> | ||
<li>[[Base Pair Orientation]]</li> | <li>[[Base Pair Orientation]]</li> | ||
<li>[[Blocking]]</li> | <li>[[Blocking]]</li> | ||
<li>[[Blocking point]]</li> | <li>[[Blocking point]]</li> | ||
<li>[[Boost points]]</li> | <li>[[Boost points]]</li> | ||
<li>[[Booster scripts]]</li> | |||
<li>[[Boosting]]</li> | <li>[[Boosting]]</li> | ||
<li>[[Bound target]]</li> | <li>[[Bound target]]</li> | ||
Line 108: | Line 99: | ||
<li>[[Bulge]]</li> | <li>[[Bulge]]</li> | ||
</ul> | </ul> | ||
<h2>C</h2> | <h2>C</h2> | ||
<ul> | <ul> | ||
Line 115: | Line 105: | ||
<li>[[Carbon]]</li> | <li>[[Carbon]]</li> | ||
<li>[[Catalyst Points]]</li> | <li>[[Catalyst Points]]</li> | ||
<li>[[Christmas Tree]]</li> | <li>[[Christmas Tree]]</li> | ||
<li>[[Closing Pair]]</li> | <li>[[Closing Pair]]</li> | ||
Line 126: | Line 114: | ||
<li>[[Constraints]]</li> | <li>[[Constraints]]</li> | ||
<li>[[CRISPR-cas9]]</li> | <li>[[CRISPR-cas9]]</li> | ||
<li>[[Cub Scout]]</li> | <li>[[Cub Scout]]</li> | ||
<li>[[Cytosine]]</li> | <li>[[Cytosine]]</li> | ||
</ul> | </ul> | ||
<h2>D</h2> | <h2>D</h2> | ||
<ul> | <ul> | ||
<li>[[Dangling ends]]</li> | <li>[[Dangling ends]]</li> | ||
<li>[[Das lab]]</li> | <li>[[Das lab]]</li> | ||
<li | <li>[[de novo]]</li> | ||
<li>[[Deoxyribose]]</li> | <li>[[Deoxyribose]]</li> | ||
<li>[[Dev Chat]]</li> | <li>[[Dev Chat]]</li> | ||
<li>[[Dictionary Chat Bot]]</li> | <li>[[Dictionary Chat Bot]]</li> | ||
<li>[[Dinucleotide]]</li> | <li>[[Dinucleotide]]</li> | ||
Line 149: | Line 134: | ||
<li>[[Double Sameturning Pair]]</li> | <li>[[Double Sameturning Pair]]</li> | ||
</ul> | </ul> | ||
<h2>E</h2> | <h2>E</h2> | ||
<ul> | <ul> | ||
Line 163: | Line 147: | ||
<li>[[ePCR]]</li> | <li>[[ePCR]]</li> | ||
<li>[[Epigenetics]]</li> | <li>[[Epigenetics]]</li> | ||
<li>[[EteRNA]]</li> | <li>[[EteRNA]]</li> | ||
<li>[[EteRNA Bot]]</li> | <li>[[EteRNA Bot]]</li> | ||
Line 170: | Line 153: | ||
<li>[[External Loop]]</li> | <li>[[External Loop]]</li> | ||
</ul> | </ul> | ||
<h2>F</h2> | <h2>F</h2> | ||
<ul> | <ul> | ||
<li>[[Flavin Mononucleotide]] ([[FMN]])</li> | <li>[[Flavin Mononucleotide]] ([[FMN]])</li> | ||
<li>[[Flips]]</li> | <li>[[Base Pair Flipping|Flips]]</li> | ||
<li>[[Fluorine]]</li> | <li>[[Fluorine]]</li> | ||
<li>[[Folding]]</li> | <li>[[Folding]]</li> | ||
<li>[[Free Energy]]</li> | <li>[[Free Energy]]</li> | ||
</ul> | </ul> | ||
<h2>G</h2> | <h2>G</h2> | ||
<ul> | <ul> | ||
Line 188: | Line 169: | ||
<li>[[Green Fluorescent Protein]]</li> | <li>[[Green Fluorescent Protein]]</li> | ||
<li>[[GU Pair]]</li> | <li>[[GU Pair]]</li> | ||
<li>[[Guanine]]</li> | <li>[[Guanine]]</li> | ||
</ul> | </ul> | ||
<h2>H</h2> | <h2>H</h2> | ||
<ul> | <ul> | ||
Line 205: | Line 184: | ||
<li>[[Hydrogen bond]]</li> | <li>[[Hydrogen bond]]</li> | ||
</ul> | </ul> | ||
<h2>I</h2> | <h2>I</h2> | ||
<ul> | <ul> | ||
<li>[[Illumina Sequencing]]</li> | <li>[[Illumina Sequencing]]</li> | ||
<li>[[Illusion]]</li> | <li>[[Illusion]]</li> | ||
<li>[[in silico]]</li> | <li>[[in silico|''in silico'']]</li> | ||
<li>[[in vitro]]</li> | <li>[[in vitro|''in vitro'']]</li> | ||
<li>[[in vivo]]</li> | <li>[[in vivo|''in vivo'']]</li> | ||
<li>[[Independent Stability]]</li> | <li>[[Independent Stability]]</li> | ||
<li>[[Inosine]]</li> | <li>[[Inosine]]</li> | ||
Line 219: | Line 197: | ||
<li>[[Isomer]]</li> | <li>[[Isomer]]</li> | ||
<li>[[IUPAC notation]]</li> | <li>[[IUPAC notation]]</li> | ||
<li>[[Isolated base | <li>[[Isolated base pair]]</li> | ||
</ul> | </ul> | ||
<h2>J</h2> | <h2>J</h2> | ||
<ul> | <ul> | ||
<li>[[Junction]]</li> | <li>[[Junction]]</li> | ||
</ul> | </ul> | ||
<h2><strong>K</strong></h2> | <h2><strong>K</strong></h2> | ||
<ul> | <ul> | ||
Line 233: | Line 209: | ||
<li>[[Kissing Loop]]</li> | <li>[[Kissing Loop]]</li> | ||
</ul> | </ul> | ||
<h2>L</h2> | <h2>L</h2> | ||
<ul> | <ul> | ||
Line 240: | Line 215: | ||
<li>[[Ligand]]</li> | <li>[[Ligand]]</li> | ||
<li>[[LinkBot]]</li> | <li>[[LinkBot]]</li> | ||
<li>[[Loop]]</li> | <li>[[Loop]]</li> | ||
<li>[[Low Performance Mode]]</li> | <li>[[Low Performance Mode]]</li> | ||
</ul> | </ul> | ||
<h2>M</h2> | <h2>M</h2> | ||
<ul> | <ul> | ||
Line 266: | Line 239: | ||
<li>[[Mutation]]</li> | <li>[[Mutation]]</li> | ||
</ul> | </ul> | ||
<h2>N</h2> | <h2>N</h2> | ||
<ul> | <ul> | ||
<li>[[Natural Mode]]</li> | <li>[[Natural Mode]]</li> | ||
<li>[[Next Generation Sequencing]]</li> | <li>[[Next Generation Sequencing]]</li> | ||
<li>[[Nitrogen]]</li> | <li>[[Nitrogen]]</li> | ||
Line 281: | Line 251: | ||
<li>[[Nupack]]</li> | <li>[[Nupack]]</li> | ||
</ul> | </ul> | ||
<h2>O</h2> | <h2>O</h2> | ||
<ul> | <ul> | ||
Line 287: | Line 256: | ||
<li>[[Oligo]]</li> | <li>[[Oligo]]</li> | ||
</ul> | </ul> | ||
<h2>P</h2> | <h2>P</h2> | ||
<ul> | <ul> | ||
Line 296: | Line 264: | ||
<li>[[Phosphorus]]</li> | <li>[[Phosphorus]]</li> | ||
<li>[[Pilot Project]]</li> | <li>[[Pilot Project]]</li> | ||
<li>[[Player Projects]]</li> | <li>[[Player Projects]]</li> | ||
<li>[[Polymerase]]</li> | <li>[[Polymerase]]</li> | ||
Line 309: | Line 276: | ||
<li>[[Pyrimidine]]</li> | <li>[[Pyrimidine]]</li> | ||
</ul> | </ul> | ||
<h2>Q</h2> | |||
<h2 | |||
<ul> | <ul> | ||
<li>[[Quad]]</li> | <li>[[Quad]]</li> | ||
</ul> | </ul> | ||
<h2>R</h2> | <h2>R</h2> | ||
<ul> | <ul> | ||
Line 328: | Line 292: | ||
<li>[[RNA]]</li> | <li>[[RNA]]</li> | ||
<li>[[RNA World Hypothesis]]</li> | <li>[[RNA World Hypothesis]]</li> | ||
<li> | <li>rRNA: ribosomal RNA</li> | ||
</ul> | </ul> | ||
<h2>S</h2> | <h2>S</h2> | ||
<ul> | <ul> | ||
<li>[[Sanger Sequencing]]</li> | <li>[[Sanger Sequencing]]</li> | ||
<li>[[Script Documentation]]</li> | <li>[[Script Documentation]]</li> | ||
<li>[[SHAPE]]</li> | <li>[[SHAPE]]</li> | ||
<li>[[Sheared G.A]]</li> | <li>[[Sheared G.A]]</li> | ||
<li>[[Shiftable puzzle]]</li> | <li>[[Shiftable puzzle]]</li> | ||
<li>[[Signal-to-noise-ratio]]</li> | <li>[[Signal-to-noise-ratio]]</li> | ||
<li>[[Slot]]</li> | <li>[[Slot]]</li> | ||
<li>[[Spinach Aptamer]]</li> | <li>[[Spinach Aptamer]]</li> | ||
<li>[[Splicing]]</li> | <li>[[Splicing]]</li> | ||
Line 352: | Line 308: | ||
<li>[[Stacking]]</li> | <li>[[Stacking]]</li> | ||
<li>[[Stem]]</li> | <li>[[Stem]]</li> | ||
<li>[[Structured RNA]]</li> | |||
<li>[[Suboptimal Structure]]</li> | <li>[[Suboptimal Structure]]</li> | ||
<li>[[Sugar]]</li> | <li>[[Sugar]]</li> | ||
Line 360: | Line 317: | ||
<li>[[Synthesis]]</li> | <li>[[Synthesis]]</li> | ||
</ul> | </ul> | ||
<h2>T</h2> | <h2>T</h2> | ||
<ul> | <ul> | ||
<li>[[Target Mode]]</li> | <li>[[Target Mode]]</li> | ||
<li>[[Terminal Mismatch]]</li> | <li>[[Terminal Mismatch]]</li> | ||
<li>[[Tetraloop]]</li> | <li>[[Tetraloop]]</li> | ||
Line 371: | Line 326: | ||
<li>[[Translation]]</li> | <li>[[Translation]]</li> | ||
<li>[[Triloop]]</li> | <li>[[Triloop]]</li> | ||
<li>[[tRNA | <li>[[Transfer RNA|tRNA]] (transfer RNA)</li> | ||
</ul> | </ul> | ||
<h2>U</h2> | <h2>U</h2> | ||
<ul> | <ul> | ||
<li>[[ | <li>[[Unstructured RNA]]</li> | ||
<li>[[Uracil]]</li> | <li>[[Uracil]]</li> | ||
</ul> | </ul> | ||
<h2>V</h2> | <h2>V</h2> | ||
<ul> | <ul> | ||
<li>[[Vienna]]</li> | <li>[[Vienna]]</li> | ||
<li>[[Virus]]</li> | <li>[[Virus]]</li> | ||
</ul> | </ul> | ||
<h2>W</h2> | <h2>W</h2> | ||
<ul> | <ul> | ||
<li>[[Watson-Crick Base Pair]]</li> | <li>[[Watson-Crick Base Pair]]</li> | ||
</ul> | </ul> | ||
<h2>X</h2> | <h2>X</h2> | ||
<ul> | <ul> | ||
<li>[[X-ray | <li>[[X-ray Crystallography]]</li> | ||
</ul> | </ul> | ||
<h2>Y</h2> | <h2>Y</h2> | ||
Line 407: | Line 357: | ||
<li>[[5']]</li> | <li>[[5']]</li> | ||
</ul> | </ul> | ||
[[Category:Basics]] | |||
[[Category:Eterna Slang]] | |||
[[Category:RNA]] |
Latest revision as of 05:54, 27 June 2022
Contents |
||||||
A
- Absolute Scaling
- Adenine
- Adjacent pairs
- Algorithm Wars
- Aligned Pair
- Alternative Structure
- Amino acid
- Antiparallel DNA
- Aptamer
- Arm
- Asymmetric multiloop
- Atom
- ATP
- AU Pair
B
- Backbone
- Bacteria
- Barcode
- Base
- Base Pair
- Base Pair Flipping
- Base Pair Orientation
- Blocking
- Blocking point
- Boost points
- Booster scripts
- Boosting
- Bound target
- Bp
- Bulge
C
- Canonical bond
- Capillary Electrophoresis
- Carbon
- Catalyst Points
- Christmas Tree
- Closing Pair
- Cloud Lab
- Coaxial Stacking
- Complementarity
- Complementary DNA (cDNA)
- Concentration
- Constraints
- CRISPR-cas9
- Cub Scout
- Cytosine
D
- Dangling ends
- Das lab
- de novo
- Deoxyribose
- Dev Chat
- Dictionary Chat Bot
- Dinucleotide
- Directionality
- DMS
- DNA
- DNA sequencing
- Dot-Bracket Notation (a.k.a. Dot-Parentheses Notation)
- Dot Plot
- Double Sameturning Pair
E
- Electron
- Elements
- Eli's Encyclopædia EteRNA
- Eli's EteRNA Dictionary
- End Loops
- Energy
- Ensemble Defect
- Ensemble Diversity
- Enzyme
- ePCR
- Epigenetics
- EteRNA
- EteRNA Bot
- EteRNA Ensemble Algorithm
- EternaBrain
- External Loop
F
G
H
- Hairpin Loop
- Hammerhead Ribozyme
- Hard-Boiling
- Helix
- Hidden Instabilities
- Hoogsteen Base Pair
- Hook
- Hotkeys
- Hydrogen
- Hydrogen bond
I
- Illumina Sequencing
- Illusion
- in silico
- in vitro
- in vivo
- Independent Stability
- Inosine
- Internal Loop
- Intron
- Isomer
- IUPAC notation
- Isolated base pair
J
K
L
M
- Malachite Green
- Melt Plot
- Melting temperature
- Messenger RNA
- microRNA (miRNA)
- Minimum Free Energy Structure (a.k.a. MFE Structure)
- Misfold
- Mismatch
- Mole
- Molecule
- Molecular Replacement
- Molecule, switch
- Monthly Eterna Meeting
- mRNA
- miRNA
- MS2
- Multiloop
- Mutation
N
- Natural Mode
- Next Generation Sequencing
- Nitrogen
- NMR
- Noncanonical base pair
- Nucleic Acid
- Nucleobase
- Nucleotide
- Nupack
O
P
- Pairing Probabilities Plot
- Pentaloop
- Paper Lab
- Phosphate
- Phosphorus
- Pilot Project
- Player Projects
- Polymerase
- Polymerase Chain Reaction (PCR)
- Probe
- Protein
- Pseudoknot
- Purine
- Puzzle
- Puzzle Designer
- Puzzle Maker
- Pyrimidine
Q
R
- Raw Data
- Residue
- Restrictions
- Ribose
- Ribosome
- Riboswitch
- Ribozyme
- RMDB
- RNA
- RNA World Hypothesis
- rRNA: ribosomal RNA
S
- Sanger Sequencing
- Script Documentation
- SHAPE
- Sheared G.A
- Shiftable puzzle
- Signal-to-noise-ratio
- Slot
- Spinach Aptamer
- Splicing
- Stack
- Stacking
- Stem
- Structured RNA
- Suboptimal Structure
- Sugar
- Sulfur
- Switch
- Switch Puzzle
- Switching area
- Synthesis
T
- Target Mode
- Terminal Mismatch
- Tetraloop
- Theophylline
- Thymine
- Translation
- Triloop
- tRNA (transfer RNA)