Eterna Dictionary: Difference between revisions
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<li>[[Backbone]]</li> | <li>[[Backbone]]</li> | ||
<li>[[Bacteria]]</li> | <li>[[Bacteria]]</li> | ||
<li>[[Badges]]</li> | |||
<li>[[Barcode]]</li> | <li>[[Barcode]]</li> | ||
<li>[[Base]]</li> | <li>[[Base]]</li> | ||
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<li>[[Carbon]]</li> | <li>[[Carbon]]</li> | ||
<li>[[Catalyst Points]]</li> | <li>[[Catalyst Points]]</li> | ||
<li>[[Chemical Reagent]]</li> | |||
<li>[[Christmas Tree]]</li> | <li>[[Christmas Tree]]</li> | ||
<li>[[Closing Pair]]</li> | <li>[[Closing Pair]]</li> | ||
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<li>[[Complementarity]]</li> | <li>[[Complementarity]]</li> | ||
<li>[[Complementary DNA]] ([[cDNA]])</li> | <li>[[Complementary DNA]] ([[cDNA]])</li> | ||
<li>[[Concentration]]</li> | |||
<li>[[Constraints]]</li> | <li>[[Constraints]]</li> | ||
<li>[[CRISPR-cas9]]</li> | |||
<li>[[CRISPR RNA]] ([[crRNA]])</li> | |||
<li>[[Cub Scout]]</li> | <li>[[Cub Scout]]</li> | ||
<li>[[Cytosine]]</li> | <li>[[Cytosine]]</li> | ||
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<li>[[Dangling ends]]</li> | <li>[[Dangling ends]]</li> | ||
<li>[[Das lab]]</li> | <li>[[Das lab]]</li> | ||
<li>[[de novo]]</li> | |||
<li>[[Deoxyribose]]</li> | <li>[[Deoxyribose]]</li> | ||
<li>[[Dev Chat]]</li> | <li>[[Dev Chat]]</li> | ||
<li>[[Diazine]]</li> | |||
<li>[[Dictionary Chat Bot]]</li> | <li>[[Dictionary Chat Bot]]</li> | ||
<li>[[Dinucleotide]]</li> | <li>[[Dinucleotide]]</li> | ||
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<li>[[Ensemble Diversity]]</li> | <li>[[Ensemble Diversity]]</li> | ||
<li>[[Enzyme]]</li> | <li>[[Enzyme]]</li> | ||
<li>[[ePCR]]</li> | |||
<li>[[Epigenetics]]</li> | <li>[[Epigenetics]]</li> | ||
<li>[[EteRNA]]</li> | <li>[[EteRNA]]</li> | ||
<li>[[EteRNA Bot]]</li> | <li>[[EteRNA Bot]]</li> | ||
<li>[[EteRNA Ensemble Algorithm]]</li> | <li>[[EteRNA Ensemble Algorithm]]</li> | ||
<li>[[EternaBrain]]</li> | |||
<li>[[External Loop]]</li> | <li>[[External Loop]]</li> | ||
</ul> | </ul> | ||
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<ul> | <ul> | ||
<li>[[Flavin Mononucleotide]] ([[FMN]])</li> | <li>[[Flavin Mononucleotide]] ([[FMN]])</li> | ||
<li>[[Flips]]</li> | |||
<li>[[Fluorine]]</li> | <li>[[Fluorine]]</li> | ||
<li>[[Folding]]</li> | <li>[[Folding]]</li> | ||
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<li>[[Gene]]</li> | <li>[[Gene]]</li> | ||
<li>[[Gibbs Free Energy]]</li> | <li>[[Gibbs Free Energy]]</li> | ||
<li>[[Green Fluorescent Protein]]</li> | |||
<li>[[GU Pair]]</li> | <li>[[GU Pair]]</li> | ||
<li>[[Guide RNA]]([[gRNA]])</li> | |||
<li>[[Guanine]]</li> | <li>[[Guanine]]</li> | ||
</ul> | </ul> | ||
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<li>[[Helix]]</li> | <li>[[Helix]]</li> | ||
<li>[[Hidden Instabilities]]</li> | <li>[[Hidden Instabilities]]</li> | ||
<li>[[Hoogsteen Base Pair]]</li> | |||
<li>[[Hook]]</li> | <li>[[Hook]]</li> | ||
<li>[[Hotkeys]]</li> | <li>[[Hotkeys]]</li> | ||
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<li>[[Illumina Sequencing]]</li> | <li>[[Illumina Sequencing]]</li> | ||
<li>[[Illusion]]</li> | <li>[[Illusion]]</li> | ||
<li>[[in silico]]</li> | |||
<li>[[in vitro]]</li> | |||
<li>[[in vivo]]</li> | |||
<li>[[Independent Stability]]</li> | <li>[[Independent Stability]]</li> | ||
<li>[[Inosine]]</li> | <li>[[Inosine]]</li> | ||
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<li>[[Isomer]]</li> | <li>[[Isomer]]</li> | ||
<li>[[IUPAC notation]]</li> | <li>[[IUPAC notation]]</li> | ||
<li>[[Isolated base pair]]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
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<li>[[Kcal]]</li> | <li>[[Kcal]]</li> | ||
<li>[[Kink Turn]] ([[K-Turn]])</li> | <li>[[Kink Turn]] ([[K-Turn]])</li> | ||
<li>[[Kissing Loop]]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
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<li>[[Ligand]]</li> | <li>[[Ligand]]</li> | ||
<li>[[LinkBot]]</li> | <li>[[LinkBot]]</li> | ||
<li>[[lncRNA]]</li> | |||
<li>[[Loop]]</li> | <li>[[Loop]]</li> | ||
<li>[[Low Performance Mode]]</li> | <li>[[Low Performance Mode]]</li> | ||
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<h2>M</h2> | <h2>M</h2> | ||
<ul> | <ul> | ||
<li>[[Malachite Green]]</li> | |||
<li>[[Melt Plot]]</li> | <li>[[Melt Plot]]</li> | ||
<li>[[Melting temperature]]</li> | <li>[[Melting temperature]]</li> | ||
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<li>[[Monthly Eterna Meeting]]</li> | <li>[[Monthly Eterna Meeting]]</li> | ||
<li>[[mRNA]]</li> | <li>[[mRNA]]</li> | ||
<li>[[miRNA]]</li> | |||
<li>[[MS2]]</li> | |||
<li>[[Multiloop]]</li> | <li>[[Multiloop]]</li> | ||
<li>[[Mutation]]</li> | <li>[[Mutation]]</li> | ||
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<ul> | <ul> | ||
<li>[[Natural Mode]]</li> | <li>[[Natural Mode]]</li> | ||
<li>[[ | <li>[[ncRNA]]</li> | ||
<li>[[Next Generation Sequencing]]</li> | <li>[[Next Generation Sequencing]]</li> | ||
<li>[[Nitrogen]]</li> | <li>[[Nitrogen]]</li> | ||
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<ul> | <ul> | ||
<li>[[Oxygen]]</li> | <li>[[Oxygen]]</li> | ||
<li>[[Oligo]]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
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<li>[[Phosphorus]]</li> | <li>[[Phosphorus]]</li> | ||
<li>[[Pilot Project]]</li> | <li>[[Pilot Project]]</li> | ||
<li>[[piRNA: piwi-interacting RNA]]</li> | |||
<li>[[Player Projects]]</li> | <li>[[Player Projects]]</li> | ||
<li>[[Polymerase]]</li> | <li>[[Polymerase]]</li> | ||
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<li>[[RNA]]</li> | <li>[[RNA]]</li> | ||
<li>[[RNA World Hypothesis]]</li> | <li>[[RNA World Hypothesis]]</li> | ||
<li>[[RNAfold]]</li> | |||
<li>[[RNAi]]</li> | |||
<li>[[rRNA]]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
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<li>[[Sanger Sequencing]]</li> | <li>[[Sanger Sequencing]]</li> | ||
<li>[[Script Documentation]]</li> | <li>[[Script Documentation]]</li> | ||
<li>[[SELEX: Systematic evolution of ligands by exponential enrichment]]</li> | |||
<li>[[SentRNA]]</li> | |||
<li>[[SHAPE]]</li> | <li>[[SHAPE]]</li> | ||
<li>[[Sheared G.A]]</li> | <li>[[Sheared G.A]]</li> | ||
<li>[[Shiftable puzzle]]</li> | <li>[[Shiftable puzzle]]</li> | ||
<li>[[Signal-to-noise-ratio]]</li> | <li>[[Signal-to-noise-ratio]]</li> | ||
<li>[[siRNA: small interfering RNA]]</li> | |||
<li>[[Slot]]</li> | <li>[[Slot]]</li> | ||
<li>[[snRNA: small nuclear RNA]]</li> | |||
<li>[[snoRNA: small nucleolar RNA]]</li> | |||
<li>[[Spinach Aptamer]]</li> | |||
<li>[[Splicing]]</li> | <li>[[Splicing]]</li> | ||
<li>[[Stack]]</li> | <li>[[Stack]]</li> | ||
<li>[[Stacking]]</li> | <li>[[Stacking]]</li> | ||
<li>[[Stem]]</li> | <li>[[Stem]]</li> | ||
<li>[[Structured RNA]]</li> | |||
<li>[[Suboptimal Structure]]</li> | <li>[[Suboptimal Structure]]</li> | ||
<li>[[Sugar]]</li> | <li>[[Sugar]]</li> | ||
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<ul> | <ul> | ||
<li>[[Target Mode]]</li> | <li>[[Target Mode]]</li> | ||
<li>[[Telomere]]</li> | |||
<li>[[Terminal Mismatch]]</li> | <li>[[Terminal Mismatch]]</li> | ||
<li>[[Tetraloop]]</li> | <li>[[Tetraloop]]</li> | ||
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<li>[[Translation]]</li> | <li>[[Translation]]</li> | ||
<li>[[Triloop]]</li> | <li>[[Triloop]]</li> | ||
<li>[[tRNA: transfer RNA]]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
<h2>U</h2> | <h2>U</h2> | ||
<ul> | <ul> | ||
<li>[[<span style="font-family: symbol;">m</span>RNA (see miRNA)]]</li> | |||
<li>[[Unstructured RNA]]</li> | |||
<li>[[Uracil]]</li> | <li>[[Uracil]]</li> | ||
</ul> | </ul> | ||
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<li>[[Vienna]]</li> | <li>[[Vienna]]</li> | ||
<li>[[Virus]]</li> | <li>[[Virus]]</li> | ||
<li>[[vRNA: vault RNA]]</li> | |||
</ul> | </ul> | ||
<p> </p> | <p> </p> | ||
<h2>W</h2> | <h2>W</h2> | ||
<ul> | |||
<li>[[Watson-Crick Base Pair]]</li> | |||
</ul> | |||
<p> </p> | |||
<h2>X</h2> | <h2>X</h2> | ||
<ul> | <ul> |
Revision as of 17:41, 15 March 2020
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Contents |
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A
- Absolute Scaling
- Adenine
- Adjacent pairs
- Algorithm Wars
- Aligned Pair
- Alternative Structure
- Amino acid
- Antiparallel DNA
- Aptamer
- Arm
- Asymmetric multiloop
- Atom
- ATP
- AU Pair
B
- Backbone
- Bacteria
- Badges
- Barcode
- Base
- Base Pair
- Base Pair Flipping
- Base Pair Orientation
- Base Triple
- Base triplets
- Blocking
- Blocking point
- Boost points
- Boosting
- Bound target
- Bp
- Bulge
C
- Canonical bond
- Capillary Electrophoresis
- Carbon
- Catalyst Points
- Chemical Reagent
- Christmas Tree
- Closing Pair
- Cloud Lab
- Coaxial Stacking
- Complementarity
- Complementary DNA (cDNA)
- Concentration
- Constraints
- CRISPR-cas9
- CRISPR RNA (crRNA)
- Cub Scout
- Cytosine
D
- Dangling ends
- Das lab
- de novo
- Deoxyribose
- Dev Chat
- Diazine
- Dictionary Chat Bot
- Dinucleotide
- Directionality
- DMS
- DNA
- DNA sequencing
- Dot-Bracket Notation (a.k.a. Dot-Parentheses Notation)
- Dot Plot
- Double Sameturning Pair
E
- Electron
- Elements
- Eli's Encyclopædia EteRNA
- Eli's EteRNA Dictionary
- End Loops
- Energy
- Ensemble Defect
- Ensemble Diversity
- Enzyme
- ePCR
- Epigenetics
- EteRNA
- EteRNA Bot
- EteRNA Ensemble Algorithm
- EternaBrain
- External Loop
F
G
- GC Pair
- Gel Electrophoresis
- Gene
- Gibbs Free Energy
- Green Fluorescent Protein
- GU Pair
- Guide RNA(gRNA)
- Guanine
H
- Hairpin Loop
- Hammerhead Ribozyme
- Hard-Boiling
- Helix
- Hidden Instabilities
- Hoogsteen Base Pair
- Hook
- Hotkeys
- Hydrogen
- Hydrogen bond
I
- Illumina Sequencing
- Illusion
- in silico
- in vitro
- in vivo
- Independent Stability
- Inosine
- Internal Loop
- Intron
- Isomer
- IUPAC notation
- Isolated base pair
J
K
L
M
- Malachite Green
- Melt Plot
- Melting temperature
- Messenger RNA
- microRNA (miRNA)
- Minimum Free Energy Structure (a.k.a. MFE Structure)
- Misfold
- Mismatch
- Mole
- Molecule
- Molecular Replacement
- Molecule, switch
- Monthly Eterna Meeting
- mRNA
- miRNA
- MS2
- Multiloop
- Mutation
N
- Natural Mode
- ncRNA
- Next Generation Sequencing
- Nitrogen
- NMR
- Noncanonical base pair
- Nucleic Acid
- Nucleobase
- Nucleotide
- Nupack
O
P
- Pairing Probabilities Plot
- Pentaloop
- Paper Lab
- Phosphate
- Phosphorus
- Pilot Project
- piRNA: piwi-interacting RNA
- Player Projects
- Polymerase
- Polymerase Chain Reaction (PCR)
- Probe
- Protein
- Pseudoknot
- Purine
- Puzzle
- Puzzle Designer
- Puzzle Maker
- Pyrimidine
Q
R
- Raw Data
- Residue
- Restrictions
- Ribose
- Ribosome
- Riboswitch
- Ribozyme
- RMDB
- RNA
- RNA World Hypothesis
- RNAfold
- RNAi
- rRNA
S
- Sanger Sequencing
- Script Documentation
- SELEX: Systematic evolution of ligands by exponential enrichment
- SentRNA
- SHAPE
- Sheared G.A
- Shiftable puzzle
- Signal-to-noise-ratio
- siRNA: small interfering RNA
- Slot
- snRNA: small nuclear RNA
- snoRNA: small nucleolar RNA
- Spinach Aptamer
- Splicing
- Stack
- Stacking
- Stem
- Structured RNA
- Suboptimal Structure
- Sugar
- Sulfur
- Switch
- Switch Puzzle
- Switching area
- Synthesis
T
- Target Mode
- Telomere
- Terminal Mismatch
- Tetraloop
- Theophylline
- Thymine
- Translation
- Triloop
- tRNA: transfer RNA
U
- [[mRNA (see miRNA)]]
- Unstructured RNA
- Uracil
V
W