Computational Tools
From Eterna Wiki
== Folding (Structure prediction) ==
<tbody> </tbody>Name | Online server | Sources and/or binaries |
ViennaRNA | http://rna.tbi.univie.ac.at/ | http://www.tbi.univie.ac.at/~ronny/RNA/index.html |
=== See also ===
== Design (Inverse Folding) ==
<tbody> </tbody>Name | Server | Sources and/or binaries |
NUPACK | http://nupack.org/ | http://nupack.org/downloads |
== Viewers ==
=== 2D viewers ===
<tbody> </tbody>Name | Server | Sources and/or binaries |
VARNA | http://varna.lri.fr/ |
=== 3D viewers ===
<tbody> </tbody>Name | Server | Sources and/or binaries |
UCSF Chimera | http://www.cgl.ucsf.edu/chimera/ | http://www.cgl.ucsf.edu/chimera/download.html |
== Lab results analysis ==
=== Data mining ===
Here are two data mining tools that are open source and have lots of built in functionality: FAKE with GAME, or its replacement Rapid-I (it's huge). All types of modeling supported. GUI drag & drop model building.
http://sourceforge.net/projects/fakegame/