Coaxial Stacking: Difference between revisions
From Eterna Wiki
No edit summary |
|||
Line 1: | Line 1: | ||
Coaxial stacking is a [[tertiary interaction]] where separate stacks in an RNA align along a common axis. | Coaxial stacking is a [[tertiary interaction]] where separate stacks in an RNA align along a common axis. | ||
Line 9: | Line 7: | ||
In [[mismatch]]-mediated stacking, the coaxially-stacked helices are separated by one or more unpaired bases. This is depicted in panels B and D in the figure at right. | In [[mismatch]]-mediated stacking, the coaxially-stacked helices are separated by one or more unpaired bases. This is depicted in panels B and D in the figure at right. | ||
=== | |||
Treatment in EteRNA |
Revision as of 00:08, 21 November 2012
Coaxial stacking is a tertiary interaction where separate stacks in an RNA align along a common axis.
Flush vs. Mismatch-Mediated Stacking
In flush stacking, the coaxially-stacked helices are not separated by any unpaired bases. This is depicted in panel C to the right.
In mismatch-mediated stacking, the coaxially-stacked helices are separated by one or more unpaired bases. This is depicted in panels B and D in the figure at right.
=
Treatment in EteRNA