Difference between revisions of "API for Server Data Queries/Server Queries: type=active projects"

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<p>{<br />&nbsp;&nbsp; "data":{<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "labs":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "nid":"3381843",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "body":"There are two ways to approach the problem I'm presenting this time.&lt;br\/&gt;&lt;br\/&gt;The first is simply to try to solve the structure the way it is actually presented in the lab (see picture below), and get the best possible score. To those who will follow this path, I wish good luck. &lt;br\/&gt;&lt;br\/&gt;&lt;img style=\"width: 400px;\"&nbsp; src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_direct.png\"\/&gt;&lt;br\/&gt;&lt;i&gt;(the color coding is simply blue\/yellow = paired\/unpaired)&lt;\/i&gt;&lt;br\/&gt;&lt;br\/&gt;The other path is (for my money) a little smarter. If you guys manage to create a so-called \"kissing hairpin\", which is another form of pseudoknot that we haven't played with until now, well, you may reach a 100 score, or very close, and given the outline below and our recent successes with pseudoknots, this seems to be easier.&lt;br\/&gt;&lt;br\/&gt;&lt;img style=\"width: 400px;\" src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_kiss.png\" \/&gt;&lt;br\/&gt;&lt;br\/&gt;Have fun! :)&lt;br\/&gt;",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "title":"New Frontier 3",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "status":"1",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "created":"28 Sep, 2013",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_uid":"49507",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder":"ElNando888",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_picture":"sites\/default\/files\/pictures\/picture-49507.png",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "proposed_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "synth_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_synth":"60",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "affiliation":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "selection":"user_vote",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cover_image":"https:\/\/s3.amazonaws.com\/eterna\/puzzle_mid_thumbnails\/thumbnail3381843.png",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cloud_round":"11",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "round":11,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "3381842"<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ]<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; }<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ],<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "restart":false<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; },<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "nid":"3376361",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "body":"As some of you may know, a handful of players have taken a keen interest in the analysis and discussion of Poly Adenine sequences. An important feature present in every run of protected Poly A is an exposed stretch of about 6 adenine residues on the 3' end. This project is meant to test several things.\r\n\r\n1. The stability of the poly A structure compared to the predicted MFE structure.\r\n\r\n2. The necessity of the 3' exposed adenine to not be participating in any interaction.\r\n\r\nHopefully, this project can shed a little light on the nature of the Poly A structure.\r\n\r\n30 slots are requested for synthesis.",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "title":"Poly (A) Structure Analysis 1",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "status":"1",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "created":"26 Sep, 2013",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_uid":"24263",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder":"Brourd",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_picture":"sites\/default\/files\/pictures\/picture-24263.png",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "proposed_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "synth_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_synth":"30",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "affiliation":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "selection":"user_vote",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cover_image":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cloud_round":"11",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "round":11,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "3363516"<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ]<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; }<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ],<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "restart":false<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; },<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ...<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ],<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_labs":"23",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_slots":"725"<br />&nbsp;&nbsp; },<br />&nbsp;&nbsp; "memcache":true<br />}</p>
 
<p>{<br />&nbsp;&nbsp; "data":{<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "labs":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "nid":"3381843",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "body":"There are two ways to approach the problem I'm presenting this time.&lt;br\/&gt;&lt;br\/&gt;The first is simply to try to solve the structure the way it is actually presented in the lab (see picture below), and get the best possible score. To those who will follow this path, I wish good luck. &lt;br\/&gt;&lt;br\/&gt;&lt;img style=\"width: 400px;\"&nbsp; src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_direct.png\"\/&gt;&lt;br\/&gt;&lt;i&gt;(the color coding is simply blue\/yellow = paired\/unpaired)&lt;\/i&gt;&lt;br\/&gt;&lt;br\/&gt;The other path is (for my money) a little smarter. If you guys manage to create a so-called \"kissing hairpin\", which is another form of pseudoknot that we haven't played with until now, well, you may reach a 100 score, or very close, and given the outline below and our recent successes with pseudoknots, this seems to be easier.&lt;br\/&gt;&lt;br\/&gt;&lt;img style=\"width: 400px;\" src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_kiss.png\" \/&gt;&lt;br\/&gt;&lt;br\/&gt;Have fun! :)&lt;br\/&gt;",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "title":"New Frontier 3",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "status":"1",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "created":"28 Sep, 2013",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_uid":"49507",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder":"ElNando888",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_picture":"sites\/default\/files\/pictures\/picture-49507.png",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "proposed_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "synth_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_synth":"60",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "affiliation":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "selection":"user_vote",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cover_image":"https:\/\/s3.amazonaws.com\/eterna\/puzzle_mid_thumbnails\/thumbnail3381843.png",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cloud_round":"11",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "round":11,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "3381842"<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ]<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; }<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ],<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "restart":false<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; },<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "nid":"3376361",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "body":"As some of you may know, a handful of players have taken a keen interest in the analysis and discussion of Poly Adenine sequences. An important feature present in every run of protected Poly A is an exposed stretch of about 6 adenine residues on the 3' end. This project is meant to test several things.\r\n\r\n1. The stability of the poly A structure compared to the predicted MFE structure.\r\n\r\n2. The necessity of the 3' exposed adenine to not be participating in any interaction.\r\n\r\nHopefully, this project can shed a little light on the nature of the Poly A structure.\r\n\r\n30 slots are requested for synthesis.",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "title":"Poly (A) Structure Analysis 1",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "status":"1",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "created":"26 Sep, 2013",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_uid":"24263",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder":"Brourd",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "founder_picture":"sites\/default\/files\/pictures\/picture-24263.png",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "proposed_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "synth_date":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_synth":"30",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "affiliation":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "selection":"user_vote",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cover_image":null,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "cloud_round":"11",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "round":11,<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "puzzles":[<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "3363516"<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ]<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; }<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ],<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "restart":false<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; },<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ...<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ],<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_labs":"23",<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "num_slots":"725"<br />&nbsp;&nbsp; },<br />&nbsp;&nbsp; "memcache":true<br />}</p>
 
<p>==Notes==</p>
 
<p>==Notes==</p>
<p><span class="sBrace structure-1">&nbsp;</span></p>
 
<div id="_mcePaste" class="mcePaste" style="position: absolute; left: -10000px; top: 0px; width: 1px; height: 1px; overflow: hidden;"><span id="s-1" class="sBrace structure-1">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span id="s-2" class="sObjectK">"data"</span><span id="s-3" class="sColon">:</span><span id="s-4" class="sBrace structure-2">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-5" class="sObjectK">"labs"</span><span id="s-6" class="sColon">:</span><span id="s-7" class="sBracket structure-3">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-8" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-9" class="sObjectK">"nid"</span><span id="s-10" class="sColon">:</span><span id="s-11" class="sObjectV">"3381843"</span><span id="s-12" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-13" class="sObjectK">"body"</span><span id="s-14" class="sColon">:</span><span id="s-15" class="sObjectV">"There&nbsp;are&nbsp;two&nbsp;ways&nbsp;to&nbsp;approach&nbsp;the&nbsp;problem&nbsp;I'm&nbsp;presenting&nbsp;this&nbsp;time.&lt;br\/&gt;&lt;br\/&gt;The&nbsp;first&nbsp;is&nbsp;simply&nbsp;to&nbsp;try&nbsp;to&nbsp;solve&nbsp;the&nbsp;structure&nbsp;the&nbsp;way&nbsp;it&nbsp;is&nbsp;actually&nbsp;presented&nbsp;in&nbsp;the&nbsp;lab&nbsp;(see&nbsp;picture&nbsp;below),&nbsp;and&nbsp;get&nbsp;the&nbsp;best&nbsp;possible&nbsp;score.&nbsp;To&nbsp;those&nbsp;who&nbsp;will&nbsp;follow&nbsp;this&nbsp;path,&nbsp;I&nbsp;wish&nbsp;good&nbsp;luck.&nbsp;&lt;br\/&gt;&lt;br\/&gt;&lt;img&nbsp;style=\"width:&nbsp;400px;\"&nbsp;&nbsp;src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_direct.png\"\/&gt;&lt;br\/&gt;&lt;i&gt;(the&nbsp;color&nbsp;coding&nbsp;is&nbsp;simply&nbsp;blue\/yellow&nbsp;=&nbsp;paired\/unpaired)&lt;\/i&gt;&lt;br\/&gt;&lt;br\/&gt;The&nbsp;other&nbsp;path&nbsp;is&nbsp;(for&nbsp;my&nbsp;money)&nbsp;a&nbsp;little&nbsp;smarter.&nbsp;If&nbsp;you&nbsp;guys&nbsp;manage&nbsp;to&nbsp;create&nbsp;a&nbsp;so-called&nbsp;\"kissing&nbsp;hairpin\",&nbsp;which&nbsp;is&nbsp;another&nbsp;form&nbsp;of&nbsp;pseudoknot&nbsp;that&nbsp;we&nbsp;haven't&nbsp;played&nbsp;with&nbsp;until&nbsp;now,&nbsp;well,&nbsp;you&nbsp;may&nbsp;reach&nbsp;a&nbsp;100&nbsp;score,&nbsp;or&nbsp;very&nbsp;close,&nbsp;and&nbsp;given&nbsp;the&nbsp;outline&nbsp;below&nbsp;and&nbsp;our&nbsp;recent&nbsp;successes&nbsp;with&nbsp;pseudoknots,&nbsp;this&nbsp;seems&nbsp;to&nbsp;be&nbsp;easier.&lt;br\/&gt;&lt;br\/&gt;&lt;img&nbsp;style=\"width:&nbsp;400px;\"&nbsp;src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_kiss.png\"&nbsp;\/&gt;&lt;br\/&gt;&lt;br\/&gt;Have&nbsp;fun!&nbsp;:)&lt;br\/&gt;"</span><span id="s-16" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-17" class="sObjectK">"title"</span><span id="s-18" class="sColon">:</span><span id="s-19" class="sObjectV">"New&nbsp;Frontier&nbsp;3"</span><span id="s-20" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-21" class="sObjectK">"status"</span><span id="s-22" class="sColon">:</span><span id="s-23" class="sObjectV">"1"</span><span id="s-24" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-25" class="sObjectK">"created"</span><span id="s-26" class="sColon">:</span><span id="s-27" class="sObjectV">"28&nbsp;Sep,&nbsp;2013"</span><span id="s-28" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-29" class="sObjectK">"founder_uid"</span><span id="s-30" class="sColon">:</span><span id="s-31" class="sObjectV">"49507"</span><span id="s-32" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-33" class="sObjectK">"founder"</span><span id="s-34" class="sColon">:</span><span id="s-35" class="sObjectV">"ElNando888"</span><span id="s-36" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-37" class="sObjectK">"founder_picture"</span><span id="s-38" class="sColon">:</span><span id="s-39" class="sObjectV">"sites\/default\/files\/pictures\/picture-49507.png"</span><span id="s-40" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-41" class="sObjectK">"proposed_date"</span><span id="s-42" class="sColon">:</span><span id="s-43" class="sObjectV">null</span><span id="s-44" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-45" class="sObjectK">"synth_date"</span><span id="s-46" class="sColon">:</span><span id="s-47" class="sObjectV">null</span><span id="s-48" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-49" class="sObjectK">"num_synth"</span><span id="s-50" class="sColon">:</span><span id="s-51" class="sObjectV">"60"</span><span id="s-52" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-53" class="sObjectK">"affiliation"</span><span id="s-54" class="sColon">:</span><span id="s-55" class="sObjectV">null</span><span id="s-56" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-57" class="sObjectK">"selection"</span><span id="s-58" class="sColon">:</span><span id="s-59" class="sObjectV">"user_vote"</span><span id="s-60" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-61" class="sObjectK">"cover_image"</span><span id="s-62" class="sColon">:</span><span id="s-63" class="sObjectV">"https:\/\/s3.amazonaws.com\/eterna\/puzzle_mid_thumbnails\/thumbnail3381843.png"</span><span id="s-64" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-65" class="sObjectK">"cloud_round"</span><span id="s-66" class="sColon">:</span><span id="s-67" class="sObjectV">"11"</span><span id="s-68" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-69" class="sObjectK">"puzzles"</span><span id="s-70" class="sColon">:</span><span id="s-71" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-72" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-73" class="sObjectK">"round"</span><span id="s-74" class="sColon">:</span><span id="s-75" class="sObjectV">11</span><span id="s-76" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-77" class="sObjectK">"puzzles"</span><span id="s-78" class="sColon">:</span><span id="s-79" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-80" class="sArrayV">"3381842"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-81" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-82" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-83" class="sBracket structure-5">]</span><span id="s-84" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-85" class="sObjectK">"restart"</span><span id="s-86" class="sColon">:</span><span id="s-87" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-88" class="sBrace structure-4">}</span><span id="s-89" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-90" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-91" class="sObjectK">"nid"</span><span id="s-92" class="sColon">:</span><span id="s-93" class="sObjectV">"3376361"</span><span id="s-94" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-95" class="sObjectK">"body"</span><span id="s-96" class="sColon">:</span><span id="s-97" class="sObjectV">"As&nbsp;some&nbsp;of&nbsp;you&nbsp;may&nbsp;know,&nbsp;a&nbsp;handful&nbsp;of&nbsp;players&nbsp;have&nbsp;taken&nbsp;a&nbsp;keen&nbsp;interest&nbsp;in&nbsp;the&nbsp;analysis&nbsp;and&nbsp;discussion&nbsp;of&nbsp;Poly&nbsp;Adenine&nbsp;sequences.&nbsp;An&nbsp;important&nbsp;feature&nbsp;present&nbsp;in&nbsp;every&nbsp;run&nbsp;of&nbsp;protected&nbsp;Poly&nbsp;A&nbsp;is&nbsp;an&nbsp;exposed&nbsp;stretch&nbsp;of&nbsp;about&nbsp;6&nbsp;adenine&nbsp;residues&nbsp;on&nbsp;the&nbsp;3'&nbsp;end.&nbsp;This&nbsp;project&nbsp;is&nbsp;meant&nbsp;to&nbsp;test&nbsp;several&nbsp;things.\r\n\r\n1.&nbsp;The&nbsp;stability&nbsp;of&nbsp;the&nbsp;poly&nbsp;A&nbsp;structure&nbsp;compared&nbsp;to&nbsp;the&nbsp;predicted&nbsp;MFE&nbsp;structure.\r\n\r\n2.&nbsp;The&nbsp;necessity&nbsp;of&nbsp;the&nbsp;3'&nbsp;exposed&nbsp;adenine&nbsp;to&nbsp;not&nbsp;be&nbsp;participating&nbsp;in&nbsp;any&nbsp;interaction.\r\n\r\nHopefully,&nbsp;this&nbsp;project&nbsp;can&nbsp;shed&nbsp;a&nbsp;little&nbsp;light&nbsp;on&nbsp;the&nbsp;nature&nbsp;of&nbsp;the&nbsp;Poly&nbsp;A&nbsp;structure.\r\n\r\n30&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-98" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-99" class="sObjectK">"title"</span><span id="s-100" class="sColon">:</span><span id="s-101" class="sObjectV">"Poly&nbsp;(A)&nbsp;Structure&nbsp;Analysis&nbsp;1"</span><span id="s-102" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-103" class="sObjectK">"status"</span><span id="s-104" class="sColon">:</span><span id="s-105" class="sObjectV">"1"</span><span id="s-106" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-107" class="sObjectK">"created"</span><span id="s-108" class="sColon">:</span><span id="s-109" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-110" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-111" class="sObjectK">"founder_uid"</span><span id="s-112" class="sColon">:</span><span id="s-113" class="sObjectV">"24263"</span><span id="s-114" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-115" class="sObjectK">"founder"</span><span id="s-116" class="sColon">:</span><span id="s-117" class="sObjectV">"Brourd"</span><span id="s-118" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-119" class="sObjectK">"founder_picture"</span><span id="s-120" class="sColon">:</span><span id="s-121" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-122" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-123" class="sObjectK">"proposed_date"</span><span id="s-124" class="sColon">:</span><span id="s-125" class="sObjectV">null</span><span id="s-126" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-127" class="sObjectK">"synth_date"</span><span id="s-128" class="sColon">:</span><span id="s-129" class="sObjectV">null</span><span id="s-130" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-131" class="sObjectK">"num_synth"</span><span id="s-132" class="sColon">:</span><span id="s-133" class="sObjectV">"30"</span><span id="s-134" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-135" class="sObjectK">"affiliation"</span><span id="s-136" class="sColon">:</span><span id="s-137" class="sObjectV">null</span><span id="s-138" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-139" class="sObjectK">"selection"</span><span id="s-140" class="sColon">:</span><span id="s-141" class="sObjectV">"user_vote"</span><span id="s-142" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-143" class="sObjectK">"cover_image"</span><span id="s-144" class="sColon">:</span><span id="s-145" class="sObjectV">null</span><span id="s-146" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-147" class="sObjectK">"cloud_round"</span><span id="s-148" class="sColon">:</span><span id="s-149" class="sObjectV">"11"</span><span id="s-150" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-151" class="sObjectK">"puzzles"</span><span id="s-152" class="sColon">:</span><span id="s-153" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-154" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-155" class="sObjectK">"round"</span><span id="s-156" class="sColon">:</span><span id="s-157" class="sObjectV">11</span><span id="s-158" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-159" class="sObjectK">"puzzles"</span><span id="s-160" class="sColon">:</span><span id="s-161" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-162" class="sArrayV">"3363516"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-163" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-164" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-165" class="sBracket structure-5">]</span><span id="s-166" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-167" class="sObjectK">"restart"</span><span id="s-168" class="sColon">:</span><span id="s-169" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-170" class="sBrace structure-4">}</span><span id="s-171" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-172" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-173" class="sObjectK">"nid"</span><span id="s-174" class="sColon">:</span><span id="s-175" class="sObjectV">"3376358"</span><span id="s-176" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-177" class="sObjectK">"body"</span><span id="s-178" class="sColon">:</span><span id="s-179" class="sObjectV">"Ready&nbsp;for&nbsp;a&nbsp;new&nbsp;twist&nbsp;in&nbsp;lab&nbsp;puzzles?&lt;br\/&gt;&lt;br\/&gt;================================================&lt;\/br&gt;&lt;i&gt;&lt;div&nbsp;style=\"fontSize:250%\"&gt;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;***&nbsp;CURSES!&nbsp;FOILED&nbsp;AGAIN!&nbsp;***&lt;\/div&gt;&lt;br\/&gt;When&nbsp;I&nbsp;proposed&nbsp;this&nbsp;lab,&nbsp;there&nbsp;was&nbsp;no&nbsp;UI&nbsp;for&nbsp;going&nbsp;back&nbsp;and&nbsp;checking&nbsp;or&nbsp;editing&nbsp;the&nbsp;proposal.&nbsp;&nbsp;I&nbsp;didn't&nbsp;find&nbsp;out&nbsp;until&nbsp;just&nbsp;now&nbsp;that&nbsp;the&nbsp;bases&nbsp;I&nbsp;intended&nbsp;to&nbsp;lock,&nbsp;in&nbsp;order&nbsp;to&nbsp;block&nbsp;the&nbsp;obvious&nbsp;AU&nbsp;matches&nbsp;from&nbsp;forming&nbsp;the&nbsp;target&nbsp;structure,&nbsp;didn't&nbsp;get&nbsp;locked.&nbsp;&nbsp;So&nbsp;as&nbsp;it&nbsp;stands,&nbsp;this&nbsp;lab,&nbsp;if&nbsp;synthesized,&nbsp;could&nbsp;be&nbsp;completely&nbsp;pointless.&lt;br\/&gt;&lt;br\/&gt;Here's&nbsp;what&nbsp;I&nbsp;propose&nbsp;in&nbsp;order&nbsp;to&nbsp;make&nbsp;something&nbsp;useful&nbsp;out&nbsp;of&nbsp;this.&nbsp;&nbsp;There's&nbsp;been&nbsp;a&nbsp;discussion&nbsp;on&nbsp;the&nbsp;forum&nbsp;about&nbsp;how&nbsp;to&nbsp;augment&nbsp;the&nbsp;lab&nbsp;submission\/voting&nbsp;procedures&nbsp;to&nbsp;better&nbsp;support&nbsp;player&nbsp;research&nbsp;where&nbsp;incentivizing&nbsp;players&nbsp;to&nbsp;get&nbsp;a&nbsp;top&nbsp;score&nbsp;with&nbsp;the&nbsp;normal&nbsp;scoring&nbsp;procedure&nbsp;is&nbsp;actually&nbsp;counter-productive.&nbsp;&nbsp;Some&nbsp;have&nbsp;come&nbsp;out&nbsp;in&nbsp;favor&nbsp;of&nbsp;simply&nbsp;giving&nbsp;the&nbsp;lab&nbsp;proposer&nbsp;total&nbsp;control&nbsp;of&nbsp;which&nbsp;designs&nbsp;get&nbsp;synthesized.&nbsp;&nbsp;I'm&nbsp;not&nbsp;totally&nbsp;against&nbsp;that,&nbsp;but&nbsp;I&nbsp;think&nbsp;it&nbsp;could&nbsp;lead&nbsp;to&nbsp;some&nbsp;resentment&nbsp;that&nbsp;we've&nbsp;so&nbsp;successfully&nbsp;avoided&nbsp;on&nbsp;Eterna.&nbsp;&nbsp;I&nbsp;think&nbsp;it&nbsp;would&nbsp;be&nbsp;better&nbsp;if&nbsp;we&nbsp;could&nbsp;use&nbsp;some&nbsp;combination&nbsp;of&nbsp;limited&nbsp;administrative&nbsp;power&nbsp;and&nbsp;players'&nbsp;cooperation&nbsp;to&nbsp;achieve&nbsp;just&nbsp;as&nbsp;good&nbsp;results.&lt;br\/&gt;&lt;br\/&gt;So&nbsp;I&nbsp;am&nbsp;going&nbsp;to&nbsp;test&nbsp;the&nbsp;effectiveness&nbsp;of&nbsp;\"player&nbsp;cooperation\"&nbsp;by&nbsp;asking&nbsp;players&nbsp;to&nbsp;settle&nbsp;on&nbsp;one&nbsp;design&nbsp;(I&nbsp;suggest&nbsp;the&nbsp;first&nbsp;submitted&nbsp;design,&nbsp;Zanna's&nbsp;\"Bender\")&nbsp;to&nbsp;vote&nbsp;for&nbsp;that&nbsp;is&nbsp;virtually&nbsp;sure&nbsp;to&nbsp;get&nbsp;you&nbsp;a&nbsp;top&nbsp;score&nbsp;for&nbsp;your&nbsp;best&nbsp;vote.&nbsp;Then,&nbsp;don't&nbsp;vote&nbsp;for&nbsp;any&nbsp;other&nbsp;design&nbsp;that&nbsp;relies&nbsp;on&nbsp;a&nbsp;long&nbsp;string&nbsp;of&nbsp;U's&nbsp;to&nbsp;achieve&nbsp;the&nbsp;target&nbsp;SHAPE&nbsp;with&nbsp;the&nbsp;long&nbsp;string&nbsp;of&nbsp;locked&nbsp;A's.&nbsp;(After&nbsp;all,&nbsp;there's&nbsp;nothing&nbsp;in&nbsp;it&nbsp;for&nbsp;you.)&nbsp;&nbsp;Brourd's&nbsp;first&nbsp;submission,&nbsp;for&nbsp;example,&nbsp;is&nbsp;shooting&nbsp;for&nbsp;the&nbsp;right&nbsp;SHAPE&nbsp;values&nbsp;without&nbsp;shooting&nbsp;for&nbsp;the&nbsp;target&nbsp;structure.&nbsp;&nbsp;If&nbsp;enough&nbsp;players&nbsp;heed&nbsp;this&nbsp;request,&nbsp;there&nbsp;will&nbsp;be&nbsp;little&nbsp;incentive&nbsp;to&nbsp;even&nbsp;submit&nbsp;a&nbsp;design&nbsp;with&nbsp;long&nbsp;AU&nbsp;strings,&nbsp;and&nbsp;most&nbsp;of&nbsp;the&nbsp;designs&nbsp;that&nbsp;get&nbsp;enough&nbsp;votes&nbsp;for&nbsp;synthesis&nbsp;will&nbsp;actually&nbsp;be&nbsp;useful&nbsp;from&nbsp;a&nbsp;research&nbsp;perspective.&lt;br\/&gt;&lt;br\/&gt;Thank&nbsp;you.&nbsp;--&nbsp;Omei&lt;\/i&gt;&lt;br\/&gt;&lt;br\/&gt;Now,&nbsp;back&nbsp;to&nbsp;our&nbsp;regular&nbsp;sponsor.&lt;br\/&gt;================================================&lt;br\/&gt;&lt;br\/&gt;The&nbsp;target&nbsp;structure&nbsp;for&nbsp;this&nbsp;lab&nbsp;looks&nbsp;pretty&nbsp;boring.&nbsp;&nbsp;The&nbsp;catch&nbsp;is&nbsp;that&nbsp;I&nbsp;have&nbsp;locked&nbsp;so&nbsp;many&nbsp;bases&nbsp;that&nbsp;you&nbsp;can't&nbsp;possibly&nbsp;get&nbsp;your&nbsp;sequence&nbsp;to&nbsp;fold&nbsp;into&nbsp;the&nbsp;target&nbsp;structure.&nbsp;&nbsp;To&nbsp;get&nbsp;a&nbsp;good&nbsp;score&nbsp;(which&nbsp;should&nbsp;be&nbsp;quite&nbsp;possible),&nbsp;you'll&nbsp;have&nbsp;to&nbsp;confront&nbsp;the&nbsp;fact&nbsp;that&nbsp;the&nbsp;lab&nbsp;gets&nbsp;results&nbsp;that&nbsp;go&nbsp;beyond&nbsp;the&nbsp;energy&nbsp;model&nbsp;used&nbsp;in&nbsp;the&nbsp;game.&lt;br\/&gt;&lt;br\/&gt;The&nbsp;scientific&nbsp;goal&nbsp;for&nbsp;this&nbsp;lab&nbsp;is&nbsp;to&nbsp;gather&nbsp;more&nbsp;data&nbsp;about&nbsp;how&nbsp;long&nbsp;strings&nbsp;of&nbsp;adenine&nbsp;somehow&nbsp;get&nbsp;protected&nbsp;from&nbsp;the&nbsp;SHAPE&nbsp;probe.&nbsp;&nbsp;Back&nbsp;in&nbsp;round&nbsp;1&nbsp;of&nbsp;Cloud&nbsp;Lab&nbsp;19&nbsp;(Eli's&nbsp;Big&nbsp;Hairpin&nbsp;Loop),&nbsp;we&nbsp;learned&nbsp;that&nbsp;if&nbsp;a&nbsp;string&nbsp;has&nbsp;enough&nbsp;consecutive&nbsp;A's,&nbsp;the&nbsp;lab&nbsp;will&nbsp;score&nbsp;them&nbsp;\"blue\",&nbsp;as&nbsp;though&nbsp;they&nbsp;are&nbsp;bound,&nbsp;even&nbsp;if&nbsp;there&nbsp;are&nbsp;no&nbsp;complementary&nbsp;bases&nbsp;for&nbsp;them&nbsp;to&nbsp;pair&nbsp;with.&nbsp;&nbsp;For&nbsp;round&nbsp;2,&nbsp;most&nbsp;people&nbsp;had&nbsp;that&nbsp;figured&nbsp;out,&nbsp;and&nbsp;loops&nbsp;weren't&nbsp;left&nbsp;with&nbsp;long&nbsp;strings&nbsp;of&nbsp;A's.&nbsp;&nbsp;This&nbsp;is&nbsp;actually&nbsp;the&nbsp;origin&nbsp;of&nbsp;the&nbsp;\"constraint\"&nbsp;that&nbsp;a&nbsp;lab&nbsp;sequence&nbsp;shouldn't&nbsp;have&nbsp;more&nbsp;than&nbsp;four&nbsp;consecutive&nbsp;A's.&nbsp;&nbsp;The&nbsp;devs&nbsp;weren't&nbsp;sure&nbsp;whether&nbsp;the&nbsp;blue&nbsp;scores&nbsp;were&nbsp;real,&nbsp;or&nbsp;whether&nbsp;there&nbsp;was&nbsp;a&nbsp;problem&nbsp;with&nbsp;the&nbsp;experimental&nbsp;procedure.&nbsp;&nbsp;But&nbsp;the&nbsp;data&nbsp;seems&nbsp;to&nbsp;be&nbsp;very&nbsp;real,&nbsp;and&nbsp;it&nbsp;suggests&nbsp;these&nbsp;poly-A&nbsp;strings&nbsp;could&nbsp;be&nbsp;of&nbsp;tremendous&nbsp;scientific&nbsp;and&nbsp;technological&nbsp;significance.&lt;br\/&gt;&lt;br\/&gt;Your&nbsp;assignment,&nbsp;should&nbsp;you&nbsp;choose&nbsp;to&nbsp;accept&nbsp;it,&nbsp;is&nbsp;to&nbsp;predict&nbsp;how&nbsp;many&nbsp;consecutive&nbsp;A's&nbsp;(and&nbsp;where)&nbsp;it&nbsp;will&nbsp;take&nbsp;to&nbsp;get&nbsp;blue&nbsp;SHAPE&nbsp;data&nbsp;to&nbsp;match&nbsp;one&nbsp;half&nbsp;of&nbsp;the&nbsp;target's&nbsp;structure,&nbsp;and&nbsp;fill&nbsp;out&nbsp;the&nbsp;other&nbsp;half&nbsp;with&nbsp;two&nbsp;hairpins&nbsp;(or&nbsp;whatever&nbsp;else&nbsp;you&nbsp;can&nbsp;think&nbsp;of)&nbsp;to&nbsp;get&nbsp;the&nbsp;other&nbsp;half&nbsp;of&nbsp;the&nbsp;SHAPE&nbsp;data&nbsp;to&nbsp;match&nbsp;what&nbsp;the&nbsp;target&nbsp;structure&nbsp;implies.&lt;br\/&gt;&lt;br\/&gt;There&nbsp;is&nbsp;already&nbsp;a&nbsp;bunch&nbsp;of&nbsp;discussion&nbsp;of&nbsp;poly-A&nbsp;results&nbsp;from&nbsp;past&nbsp;labs&nbsp;on&nbsp;the&nbsp;forums.&nbsp;&nbsp;See&nbsp;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/eixkksvt9lty3\"&gt;Long&nbsp;stretches&nbsp;of&nbsp;A\u2019s&nbsp;and&nbsp;metal&nbsp;ions&nbsp;-&nbsp;a&nbsp;love&nbsp;story?&lt;\/a&gt;,&nbsp;and&nbsp;I'll&nbsp;post&nbsp;some&nbsp;kind&nbsp;of&nbsp;compact&nbsp;summary&nbsp;of&nbsp;it&nbsp;when&nbsp;the&nbsp;lab&nbsp;goes&nbsp;live."</span><span id="s-180" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-181" class="sObjectK">"title"</span><span id="s-182" class="sColon">:</span><span id="s-183" class="sObjectV">"Impossible&nbsp;Folding&nbsp;I"</span><span id="s-184" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-185" class="sObjectK">"status"</span><span id="s-186" class="sColon">:</span><span id="s-187" class="sObjectV">"1"</span><span id="s-188" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-189" class="sObjectK">"created"</span><span id="s-190" class="sColon">:</span><span id="s-191" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-192" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-193" class="sObjectK">"founder_uid"</span><span id="s-194" class="sColon">:</span><span id="s-195" class="sObjectV">"57675"</span><span id="s-196" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-197" class="sObjectK">"founder"</span><span id="s-198" class="sColon">:</span><span id="s-199" class="sObjectV">"Omei"</span><span id="s-200" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-201" class="sObjectK">"founder_picture"</span><span id="s-202" class="sColon">:</span><span id="s-203" class="sObjectV">"sites\/default\/files\/pictures\/picture-57675.png"</span><span id="s-204" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-205" class="sObjectK">"proposed_date"</span><span id="s-206" class="sColon">:</span><span id="s-207" class="sObjectV">null</span><span id="s-208" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-209" class="sObjectK">"synth_date"</span><span id="s-210" class="sColon">:</span><span id="s-211" class="sObjectV">null</span><span id="s-212" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-213" class="sObjectK">"num_synth"</span><span id="s-214" class="sColon">:</span><span id="s-215" class="sObjectV">"40"</span><span id="s-216" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-217" class="sObjectK">"affiliation"</span><span id="s-218" class="sColon">:</span><span id="s-219" class="sObjectV">null</span><span id="s-220" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-221" class="sObjectK">"selection"</span><span id="s-222" class="sColon">:</span><span id="s-223" class="sObjectV">"user_vote"</span><span id="s-224" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-225" class="sObjectK">"cover_image"</span><span id="s-226" class="sColon">:</span><span id="s-227" class="sObjectV">null</span><span id="s-228" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-229" class="sObjectK">"cloud_round"</span><span id="s-230" class="sColon">:</span><span id="s-231" class="sObjectV">"11"</span><span id="s-232" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-233" class="sObjectK">"puzzles"</span><span id="s-234" class="sColon">:</span><span id="s-235" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-236" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-237" class="sObjectK">"round"</span><span id="s-238" class="sColon">:</span><span id="s-239" class="sObjectV">11</span><span id="s-240" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-241" class="sObjectK">"puzzles"</span><span id="s-242" class="sColon">:</span><span id="s-243" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-244" class="sArrayV">"3340873"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-245" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-246" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-247" class="sBracket structure-5">]</span><span id="s-248" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-249" class="sObjectK">"restart"</span><span id="s-250" class="sColon">:</span><span id="s-251" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-252" class="sBrace structure-4">}</span><span id="s-253" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-254" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-255" class="sObjectK">"nid"</span><span id="s-256" class="sColon">:</span><span id="s-257" class="sObjectV">"3376356"</span><span id="s-258" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-259" class="sObjectK">"body"</span><span id="s-260" class="sColon">:</span><span id="s-261" class="sObjectV">"This&nbsp;frequency&nbsp;experiment&nbsp;a&nbsp;the&nbsp;continuation&nbsp;of&nbsp;Leontis\u2019&nbsp;lab&nbsp;&lt;a&nbsp;href=\"http:\/\/eterna.cmu.edu\/web\/lab\/3096140\/\"&gt;Intrinsically&nbsp;folded&nbsp;RNA&lt;\/a&gt;&lt;br\/&gt;&lt;br\/&gt;Instructions:&lt;br\/&gt;In&nbsp;this&nbsp;lab,&nbsp;I&nbsp;have&nbsp;locked&nbsp;the&nbsp;yellow&nbsp;bases&nbsp;at&nbsp;a&nbsp;particular&nbsp;interval.&nbsp;\n\nUPDATE:&nbsp;Originally&nbsp;I&nbsp;asked&nbsp;for&nbsp;following&nbsp;in&nbsp;this&nbsp;lab:&nbsp;\"Use&nbsp;either,&nbsp;blue,&nbsp;green&nbsp;or&nbsp;red&nbsp;bases&nbsp;at&nbsp;the&nbsp;unlocked&nbsp;spots&nbsp;in&nbsp;the&nbsp;string&nbsp;(63&nbsp;bases)&nbsp;and&nbsp;use&nbsp;same&nbsp;color&nbsp;the&nbsp;whole&nbsp;way&nbsp;through.\"\n\nHowever&nbsp;after&nbsp;I&nbsp;proposed&nbsp;the&nbsp;lab,&nbsp;Omei&nbsp;and&nbsp;the&nbsp;forum&nbsp;discussion&nbsp;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/is_there_a_position_dependent_bias_in_the_shape_data\"&gt;Is&nbsp;there&nbsp;a&nbsp;position-dependent&nbsp;bias&nbsp;in&nbsp;the&nbsp;SHAPE&nbsp;data?&lt;\/a&gt;&nbsp;brought&nbsp;to&nbsp;my&nbsp;attention&nbsp;that&nbsp;the&nbsp;DNA&nbsp;sequencing&nbsp;procedure&nbsp;used&nbsp;in&nbsp;the&nbsp;cloud&nbsp;labs&nbsp;starts&nbsp;to&nbsp;go&nbsp;bad&nbsp;if&nbsp;any&nbsp;25&nbsp;(or&nbsp;longer)&nbsp;sub-sequence&nbsp;of&nbsp;the&nbsp;design&nbsp;appears&nbsp;more&nbsp;than&nbsp;once&nbsp;in&nbsp;the&nbsp;full&nbsp;sequence.&nbsp;&nbsp;This&nbsp;means&nbsp;you&nbsp;shouldn't&nbsp;fill&nbsp;in&nbsp;your&nbsp;entire&nbsp;design&nbsp;with&nbsp;the&nbsp;identical&nbsp;pattern,&nbsp;unless&nbsp;you&nbsp;are&nbsp;consciously&nbsp;doing&nbsp;it&nbsp;because&nbsp;you&nbsp;are&nbsp;curious&nbsp;about&nbsp;what&nbsp;the&nbsp;data&nbsp;processing&nbsp;will&nbsp;do&nbsp;with&nbsp;it.\n\n&lt;br\/&gt;&lt;br\/&gt;Aim:&nbsp;This&nbsp;is&nbsp;part&nbsp;of&nbsp;an&nbsp;ongoing&nbsp;investigation&nbsp;to&nbsp;find&nbsp;out&nbsp;which&nbsp;bases&nbsp;draws&nbsp;special&nbsp;patterns&nbsp;in&nbsp;the&nbsp;SHAPE&nbsp;data.&nbsp;Already&nbsp;there&nbsp;are&nbsp;binding&nbsp;patterns&nbsp;emerging&nbsp;in&nbsp;the&nbsp;SHAPE&nbsp;data,&nbsp;in&nbsp;relation&nbsp;to&nbsp;the&nbsp;&nbsp;frequency&nbsp;of&nbsp;a&nbsp;non-A&nbsp;base&nbsp;placed&nbsp;in&nbsp;a&nbsp;string&nbsp;of&nbsp;A\u2019s.&nbsp;We&nbsp;are&nbsp;several&nbsp;players&nbsp;taking&nbsp;interest&nbsp;in&nbsp;those.&lt;br\/&gt;&lt;br\/&gt;Check&nbsp;out&nbsp;the&nbsp;discussion&nbsp;and&nbsp;ideas&nbsp;here:&lt;br\/&gt;&lt;br\/&gt;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/eixkksvt9lty3\"&gt;Long&nbsp;stretches&nbsp;of&nbsp;A\u2019s&nbsp;and&nbsp;metal&nbsp;ions&nbsp;-&nbsp;a&nbsp;love&nbsp;story?&lt;\/a&gt;&lt;br\/&gt;\n&nbsp;"</span><span id="s-262" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-263" class="sObjectK">"title"</span><span id="s-264" class="sColon">:</span><span id="s-265" class="sObjectV">"Intrinsical&nbsp;-&nbsp;Frequency&nbsp;8"</span><span id="s-266" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-267" class="sObjectK">"status"</span><span id="s-268" class="sColon">:</span><span id="s-269" class="sObjectV">"1"</span><span id="s-270" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-271" class="sObjectK">"created"</span><span id="s-272" class="sColon">:</span><span id="s-273" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-274" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-275" class="sObjectK">"founder_uid"</span><span id="s-276" class="sColon">:</span><span id="s-277" class="sObjectV">"8627"</span><span id="s-278" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-279" class="sObjectK">"founder"</span><span id="s-280" class="sColon">:</span><span id="s-281" class="sObjectV">"Eli&nbsp;Fisker"</span><span id="s-282" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-283" class="sObjectK">"founder_picture"</span><span id="s-284" class="sColon">:</span><span id="s-285" class="sObjectV">"sites\/default\/files\/pictures\/picture-8627.jpg"</span><span id="s-286" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-287" class="sObjectK">"proposed_date"</span><span id="s-288" class="sColon">:</span><span id="s-289" class="sObjectV">null</span><span id="s-290" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-291" class="sObjectK">"synth_date"</span><span id="s-292" class="sColon">:</span><span id="s-293" class="sObjectV">null</span><span id="s-294" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-295" class="sObjectK">"num_synth"</span><span id="s-296" class="sColon">:</span><span id="s-297" class="sObjectV">"60"</span><span id="s-298" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-299" class="sObjectK">"affiliation"</span><span id="s-300" class="sColon">:</span><span id="s-301" class="sObjectV">null</span><span id="s-302" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-303" class="sObjectK">"selection"</span><span id="s-304" class="sColon">:</span><span id="s-305" class="sObjectV">"user_vote"</span><span id="s-306" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-307" class="sObjectK">"cover_image"</span><span id="s-308" class="sColon">:</span><span id="s-309" class="sObjectV">null</span><span id="s-310" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-311" class="sObjectK">"cloud_round"</span><span id="s-312" class="sColon">:</span><span id="s-313" class="sObjectV">"11"</span><span id="s-314" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-315" class="sObjectK">"puzzles"</span><span id="s-316" class="sColon">:</span><span id="s-317" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-318" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-319" class="sObjectK">"round"</span><span id="s-320" class="sColon">:</span><span id="s-321" class="sObjectV">11</span><span id="s-322" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-323" class="sObjectK">"puzzles"</span><span id="s-324" class="sColon">:</span><span id="s-325" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-326" class="sArrayV">"3337059"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-327" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-328" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-329" class="sBracket structure-5">]</span><span id="s-330" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-331" class="sObjectK">"restart"</span><span id="s-332" class="sColon">:</span><span id="s-333" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-334" class="sBrace structure-4">}</span><span id="s-335" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-336" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-337" class="sObjectK">"nid"</span><span id="s-338" class="sColon">:</span><span id="s-339" class="sObjectV">"3376349"</span><span id="s-340" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-341" class="sObjectK">"body"</span><span id="s-342" class="sColon">:</span><span id="s-343" class="sObjectV">"This&nbsp;frequency&nbsp;experiment&nbsp;a&nbsp;the&nbsp;continuation&nbsp;of&nbsp;Leontis\u2019&nbsp;lab&nbsp;&lt;a&nbsp;href=\"http:\/\/eterna.cmu.edu\/web\/lab\/3096140\/\"&gt;Intrinsically&nbsp;folded&nbsp;RNA&lt;\/a&gt;&lt;br\/&gt;&lt;br\/&gt;Instructions:&lt;br\/&gt;In&nbsp;this&nbsp;lab,&nbsp;I&nbsp;have&nbsp;locked&nbsp;the&nbsp;yellow&nbsp;bases&nbsp;at&nbsp;a&nbsp;particular&nbsp;interval.&nbsp;&lt;br\/&gt;&lt;br\/&gt;UPDATE:&nbsp;Originally&nbsp;I&nbsp;asked&nbsp;for&nbsp;following&nbsp;in&nbsp;this&nbsp;lab:&nbsp;\"Use&nbsp;either,&nbsp;blue,&nbsp;green&nbsp;or&nbsp;red&nbsp;bases&nbsp;at&nbsp;the&nbsp;unlocked&nbsp;spots&nbsp;in&nbsp;the&nbsp;string&nbsp;(63&nbsp;bases)&nbsp;and&nbsp;use&nbsp;same&nbsp;color&nbsp;the&nbsp;whole&nbsp;way&nbsp;through.\"&lt;br\/&gt;&lt;br\/&gt;However&nbsp;after&nbsp;I&nbsp;proposed&nbsp;the&nbsp;lab,&nbsp;Omei&nbsp;and&nbsp;the&nbsp;forum&nbsp;discussion&nbsp;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/is_there_a_position_dependent_bias_in_the_shape_data\"&gt;Is&nbsp;there&nbsp;a&nbsp;position-dependent&nbsp;bias&nbsp;in&nbsp;the&nbsp;SHAPE&nbsp;data?&lt;\/a&gt;&nbsp;brought&nbsp;to&nbsp;my&nbsp;attention&nbsp;that&nbsp;the&nbsp;DNA&nbsp;sequencing&nbsp;procedure&nbsp;used&nbsp;in&nbsp;the&nbsp;cloud&nbsp;labs&nbsp;starts&nbsp;to&nbsp;go&nbsp;bad&nbsp;if&nbsp;any&nbsp;25&nbsp;(or&nbsp;longer)&nbsp;sub-sequence&nbsp;of&nbsp;the&nbsp;design&nbsp;appears&nbsp;more&nbsp;than&nbsp;once&nbsp;in&nbsp;the&nbsp;full&nbsp;sequence.&nbsp;&nbsp;This&nbsp;means&nbsp;you&nbsp;shouldn't&nbsp;fill&nbsp;in&nbsp;your&nbsp;entire&nbsp;design&nbsp;with&nbsp;the&nbsp;identical&nbsp;pattern,&nbsp;unless&nbsp;you&nbsp;are&nbsp;consciously&nbsp;doing&nbsp;it&nbsp;because&nbsp;you&nbsp;are&nbsp;curious&nbsp;about&nbsp;what&nbsp;the&nbsp;data&nbsp;processing&nbsp;will&nbsp;do&nbsp;with&nbsp;it.&lt;br\/&gt;&lt;br\/&gt;Aim:&nbsp;This&nbsp;is&nbsp;part&nbsp;of&nbsp;an&nbsp;ongoing&nbsp;investigation&nbsp;to&nbsp;find&nbsp;out&nbsp;which&nbsp;bases&nbsp;draws&nbsp;special&nbsp;patterns&nbsp;in&nbsp;the&nbsp;SHAPE&nbsp;data.&nbsp;Already&nbsp;there&nbsp;are&nbsp;binding&nbsp;patterns&nbsp;emerging&nbsp;in&nbsp;the&nbsp;SHAPE&nbsp;data,&nbsp;in&nbsp;relation&nbsp;to&nbsp;the&nbsp;&nbsp;frequency&nbsp;of&nbsp;a&nbsp;non-A&nbsp;base&nbsp;placed&nbsp;in&nbsp;a&nbsp;string&nbsp;of&nbsp;A\u2019s.&nbsp;We&nbsp;are&nbsp;several&nbsp;players&nbsp;taking&nbsp;interest&nbsp;in&nbsp;those.&lt;br\/&gt;&lt;br\/&gt;Check&nbsp;out&nbsp;the&nbsp;discussion&nbsp;and&nbsp;ideas&nbsp;here:&lt;br\/&gt;&lt;br\/&gt;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/eixkksvt9lty3\"&gt;Long&nbsp;stretches&nbsp;of&nbsp;A\u2019s&nbsp;and&nbsp;metal&nbsp;ions&nbsp;-&nbsp;a&nbsp;love&nbsp;story?&lt;\/a&gt;&lt;br\/&gt;&lt;br\/&gt;&lt;br\/&gt;This&nbsp;lab&nbsp;is&nbsp;in&nbsp;honor&nbsp;of&nbsp;Nando&nbsp;who&nbsp;wish&nbsp;to&nbsp;check&nbsp;out&nbsp;CACA...&lt;br\/&gt;&lt;br\/&gt;&lt;br\/&gt;&lt;br\/&gt;&lt;br\/&gt;"</span><span id="s-344" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-345" class="sObjectK">"title"</span><span id="s-346" class="sColon">:</span><span id="s-347" class="sObjectV">"Intrinsical&nbsp;-&nbsp;Frequency&nbsp;1"</span><span id="s-348" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-349" class="sObjectK">"status"</span><span id="s-350" class="sColon">:</span><span id="s-351" class="sObjectV">"1"</span><span id="s-352" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-353" class="sObjectK">"created"</span><span id="s-354" class="sColon">:</span><span id="s-355" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-356" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-357" class="sObjectK">"founder_uid"</span><span id="s-358" class="sColon">:</span><span id="s-359" class="sObjectV">"8627"</span><span id="s-360" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-361" class="sObjectK">"founder"</span><span id="s-362" class="sColon">:</span><span id="s-363" class="sObjectV">"Eli&nbsp;Fisker"</span><span id="s-364" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-365" class="sObjectK">"founder_picture"</span><span id="s-366" class="sColon">:</span><span id="s-367" class="sObjectV">"sites\/default\/files\/pictures\/picture-8627.jpg"</span><span id="s-368" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-369" class="sObjectK">"proposed_date"</span><span id="s-370" class="sColon">:</span><span id="s-371" class="sObjectV">null</span><span id="s-372" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-373" class="sObjectK">"synth_date"</span><span id="s-374" class="sColon">:</span><span id="s-375" class="sObjectV">null</span><span id="s-376" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-377" class="sObjectK">"num_synth"</span><span id="s-378" class="sColon">:</span><span id="s-379" class="sObjectV">"60"</span><span id="s-380" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-381" class="sObjectK">"affiliation"</span><span id="s-382" class="sColon">:</span><span id="s-383" class="sObjectV">null</span><span id="s-384" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-385" class="sObjectK">"selection"</span><span id="s-386" class="sColon">:</span><span id="s-387" class="sObjectV">"user_vote"</span><span id="s-388" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-389" class="sObjectK">"cover_image"</span><span id="s-390" class="sColon">:</span><span id="s-391" class="sObjectV">null</span><span id="s-392" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-393" class="sObjectK">"cloud_round"</span><span id="s-394" class="sColon">:</span><span id="s-395" class="sObjectV">"11"</span><span id="s-396" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-397" class="sObjectK">"puzzles"</span><span id="s-398" class="sColon">:</span><span id="s-399" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-400" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-401" class="sObjectK">"round"</span><span id="s-402" class="sColon">:</span><span id="s-403" class="sObjectV">11</span><span id="s-404" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-405" class="sObjectK">"puzzles"</span><span id="s-406" class="sColon">:</span><span id="s-407" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-408" class="sArrayV">"3336922"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-409" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-410" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-411" class="sBracket structure-5">]</span><span id="s-412" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-413" class="sObjectK">"restart"</span><span id="s-414" class="sColon">:</span><span id="s-415" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-416" class="sBrace structure-4">}</span><span id="s-417" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-418" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-419" class="sObjectK">"nid"</span><span id="s-420" class="sColon">:</span><span id="s-421" class="sObjectV">"3376343"</span><span id="s-422" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-423" class="sObjectK">"body"</span><span id="s-424" class="sColon">:</span><span id="s-425" class="sObjectV">"My&nbsp;lab&nbsp;Big&nbsp;hairpin&nbsp;loop&nbsp;had&nbsp;55&nbsp;single&nbsp;nucleotides&nbsp;in&nbsp;the&nbsp;loop.&nbsp;Leontis&nbsp;lab&nbsp;Intrinsically&nbsp;folded&nbsp;RNA&nbsp;had&nbsp;63&nbsp;single&nbsp;bases&nbsp;in&nbsp;a&nbsp;row.&nbsp;(not&nbsp;counting&nbsp;the&nbsp;first&nbsp;5&nbsp;lead&nbsp;ones).&nbsp;In&nbsp;longer&nbsp;stretches&nbsp;of&nbsp;all&nbsp;A's,&nbsp;I&nbsp;see&nbsp;the&nbsp;color&nbsp;of&nbsp;SHAPE&nbsp;data&nbsp;and&nbsp;the&nbsp;bluish&nbsp;color&nbsp;beginning,&nbsp;change&nbsp;depending&nbsp;on&nbsp;length&nbsp;of&nbsp;the&nbsp;lines&nbsp;of&nbsp;A's.&nbsp;&lt;br\/&gt;&lt;br\/&gt;So&nbsp;now&nbsp;I'm&nbsp;going&nbsp;to&nbsp;make&nbsp;a&nbsp;real&nbsp;big&nbsp;hairpin&nbsp;loop.&nbsp;I&nbsp;think&nbsp;the&nbsp;length&nbsp;of&nbsp;poly&nbsp;A's&nbsp;matter.&nbsp;&lt;br\/&gt;&lt;br\/&gt;In&nbsp;this&nbsp;lab&nbsp;I&nbsp;expect&nbsp;the&nbsp;bluish&nbsp;pattern&nbsp;from&nbsp;the&nbsp;start&nbsp;of&nbsp;A's&nbsp;sequences&nbsp;to&nbsp;be&nbsp;longer,&nbsp;but&nbsp;also&nbsp;go&nbsp;weaker&nbsp;and&nbsp;more&nbsp;towards&nbsp;yellow&nbsp;in&nbsp;color,&nbsp;judging&nbsp;on&nbsp;what&nbsp;I&nbsp;see&nbsp;this&nbsp;far.&nbsp;&lt;br\/&gt;&lt;br\/&gt;In&nbsp;this&nbsp;lab&nbsp;I&nbsp;have&nbsp;locked&nbsp;most&nbsp;of&nbsp;the&nbsp;loop&nbsp;nucleotides.&nbsp;In&nbsp;the&nbsp;control&nbsp;lab,&nbsp;I&nbsp;have&nbsp;left&nbsp;them&nbsp;unlocked,&nbsp;so&nbsp;you&nbsp;can&nbsp;test&nbsp;out&nbsp;what&nbsp;you&nbsp;think&nbsp;will&nbsp;be&nbsp;successfull&nbsp;patterns.&nbsp;&lt;br\/&gt;&lt;br\/&gt;Omei&nbsp;proposed&nbsp;the&nbsp;idea&nbsp;that&nbsp;a&nbsp;coil&nbsp;might&nbsp;be&nbsp;happening&nbsp;in&nbsp;the&nbsp;RNA&nbsp;in&nbsp;long&nbsp;stretches&nbsp;of&nbsp;A's&nbsp;and&nbsp;this&nbsp;is&nbsp;why&nbsp;the&nbsp;loop&nbsp;appears&nbsp;to&nbsp;be&nbsp;binding&nbsp;up&nbsp;with&nbsp;itself.&nbsp;I&nbsp;find&nbsp;that&nbsp;interesting.&nbsp;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/eixkksvt9lty3#reply_12910832\"&gt;Is&nbsp;this&nbsp;what&nbsp;happens?&lt;\/a&gt;&nbsp;&lt;br\/&gt;&lt;br\/&gt;Read&nbsp;more&nbsp;about&nbsp;the&nbsp;ideas&nbsp;behind&nbsp;in&nbsp;this&nbsp;post.&nbsp;We&nbsp;are&nbsp;several&nbsp;players&nbsp;taking&nbsp;interest&nbsp;in&nbsp;this.&nbsp;&lt;br\/&gt;&lt;br\/&gt;&nbsp;&lt;a&nbsp;href=\"https:\/\/getsatisfaction.com\/eternagame\/topics\/eixkksvt9lty3#topic_5629966\"&gt;Long&nbsp;stretches&nbsp;of&nbsp;A\u2019s&nbsp;and&nbsp;metal&nbsp;ions&nbsp;-&nbsp;a&nbsp;love&nbsp;story?&lt;\/a&gt;&nbsp;&lt;br\/&gt;&lt;br\/&gt;Welcome&nbsp;to&nbsp;join&nbsp;the&nbsp;investigation!&lt;br\/&gt;&lt;br\/&gt;"</span><span id="s-426" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-427" class="sObjectK">"title"</span><span id="s-428" class="sColon">:</span><span id="s-429" class="sObjectV">"Really&nbsp;big&nbsp;loop&nbsp;coil&nbsp;-&nbsp;Classic&nbsp;science&nbsp;toy"</span><span id="s-430" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-431" class="sObjectK">"status"</span><span id="s-432" class="sColon">:</span><span id="s-433" class="sObjectV">"1"</span><span id="s-434" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-435" class="sObjectK">"created"</span><span id="s-436" class="sColon">:</span><span id="s-437" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-438" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-439" class="sObjectK">"founder_uid"</span><span id="s-440" class="sColon">:</span><span id="s-441" class="sObjectV">"8627"</span><span id="s-442" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-443" class="sObjectK">"founder"</span><span id="s-444" class="sColon">:</span><span id="s-445" class="sObjectV">"Eli&nbsp;Fisker"</span><span id="s-446" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-447" class="sObjectK">"founder_picture"</span><span id="s-448" class="sColon">:</span><span id="s-449" class="sObjectV">"sites\/default\/files\/pictures\/picture-8627.jpg"</span><span id="s-450" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-451" class="sObjectK">"proposed_date"</span><span id="s-452" class="sColon">:</span><span id="s-453" class="sObjectV">null</span><span id="s-454" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-455" class="sObjectK">"synth_date"</span><span id="s-456" class="sColon">:</span><span id="s-457" class="sObjectV">null</span><span id="s-458" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-459" class="sObjectK">"num_synth"</span><span id="s-460" class="sColon">:</span><span id="s-461" class="sObjectV">"40"</span><span id="s-462" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-463" class="sObjectK">"affiliation"</span><span id="s-464" class="sColon">:</span><span id="s-465" class="sObjectV">null</span><span id="s-466" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-467" class="sObjectK">"selection"</span><span id="s-468" class="sColon">:</span><span id="s-469" class="sObjectV">"user_vote"</span><span id="s-470" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-471" class="sObjectK">"cover_image"</span><span id="s-472" class="sColon">:</span><span id="s-473" class="sObjectV">"https:\/\/s3.amazonaws.com\/eterna\/cloud_lab_pictures\/picture-1379027081.png"</span><span id="s-474" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-475" class="sObjectK">"cloud_round"</span><span id="s-476" class="sColon">:</span><span id="s-477" class="sObjectV">"11"</span><span id="s-478" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-479" class="sObjectK">"puzzles"</span><span id="s-480" class="sColon">:</span><span id="s-481" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-482" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-483" class="sObjectK">"round"</span><span id="s-484" class="sColon">:</span><span id="s-485" class="sObjectV">11</span><span id="s-486" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-487" class="sObjectK">"puzzles"</span><span id="s-488" class="sColon">:</span><span id="s-489" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-490" class="sArrayV">"3328967"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-491" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-492" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-493" class="sBracket structure-5">]</span><span id="s-494" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-495" class="sObjectK">"restart"</span><span id="s-496" class="sColon">:</span><span id="s-497" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-498" class="sBrace structure-4">}</span><span id="s-499" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-500" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-501" class="sObjectK">"nid"</span><span id="s-502" class="sColon">:</span><span id="s-503" class="sObjectV">"3376328"</span><span id="s-504" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-505" class="sObjectK">"body"</span><span id="s-506" class="sColon">:</span><span id="s-507" class="sObjectV">"In&nbsp;this&nbsp;project,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;profile&nbsp;of&nbsp;a&nbsp;structure&nbsp;where&nbsp;a&nbsp;sequence&nbsp;should&nbsp;have&nbsp;an&nbsp;almost&nbsp;equal&nbsp;chance&nbsp;to&nbsp;fold&nbsp;into&nbsp;two&nbsp;different&nbsp;conformations.&nbsp;In&nbsp;this&nbsp;case,&nbsp;it&nbsp;is&nbsp;a&nbsp;C-G&nbsp;pair&nbsp;with&nbsp;a&nbsp;single&nbsp;bulging&nbsp;residue.&nbsp;25&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-508" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-509" class="sObjectK">"title"</span><span id="s-510" class="sColon">:</span><span id="s-511" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;Most&nbsp;Likely&nbsp;Base&nbsp;Pair&nbsp;C\/G"</span><span id="s-512" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-513" class="sObjectK">"status"</span><span id="s-514" class="sColon">:</span><span id="s-515" class="sObjectV">"1"</span><span id="s-516" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-517" class="sObjectK">"created"</span><span id="s-518" class="sColon">:</span><span id="s-519" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-520" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-521" class="sObjectK">"founder_uid"</span><span id="s-522" class="sColon">:</span><span id="s-523" class="sObjectV">"24263"</span><span id="s-524" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-525" class="sObjectK">"founder"</span><span id="s-526" class="sColon">:</span><span id="s-527" class="sObjectV">"Brourd"</span><span id="s-528" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-529" class="sObjectK">"founder_picture"</span><span id="s-530" class="sColon">:</span><span id="s-531" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-532" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-533" class="sObjectK">"proposed_date"</span><span id="s-534" class="sColon">:</span><span id="s-535" class="sObjectV">null</span><span id="s-536" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-537" class="sObjectK">"synth_date"</span><span id="s-538" class="sColon">:</span><span id="s-539" class="sObjectV">null</span><span id="s-540" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-541" class="sObjectK">"num_synth"</span><span id="s-542" class="sColon">:</span><span id="s-543" class="sObjectV">"25"</span><span id="s-544" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-545" class="sObjectK">"affiliation"</span><span id="s-546" class="sColon">:</span><span id="s-547" class="sObjectV">null</span><span id="s-548" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-549" class="sObjectK">"selection"</span><span id="s-550" class="sColon">:</span><span id="s-551" class="sObjectV">"user_vote"</span><span id="s-552" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-553" class="sObjectK">"cover_image"</span><span id="s-554" class="sColon">:</span><span id="s-555" class="sObjectV">null</span><span id="s-556" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-557" class="sObjectK">"cloud_round"</span><span id="s-558" class="sColon">:</span><span id="s-559" class="sObjectV">"11"</span><span id="s-560" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-561" class="sObjectK">"puzzles"</span><span id="s-562" class="sColon">:</span><span id="s-563" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-564" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-565" class="sObjectK">"round"</span><span id="s-566" class="sColon">:</span><span id="s-567" class="sObjectV">11</span><span id="s-568" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-569" class="sObjectK">"puzzles"</span><span id="s-570" class="sColon">:</span><span id="s-571" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-572" class="sArrayV">"3292609"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-573" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-574" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-575" class="sBracket structure-5">]</span><span id="s-576" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-577" class="sObjectK">"restart"</span><span id="s-578" class="sColon">:</span><span id="s-579" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-580" class="sBrace structure-4">}</span><span id="s-581" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-582" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-583" class="sObjectK">"nid"</span><span id="s-584" class="sColon">:</span><span id="s-585" class="sObjectV">"3376327"</span><span id="s-586" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-587" class="sObjectK">"body"</span><span id="s-588" class="sColon">:</span><span id="s-589" class="sObjectV">"According&nbsp;to&nbsp;the&nbsp;results&nbsp;for&nbsp;Location&nbsp;Dependent&nbsp;Chemical&nbsp;Footprints&nbsp;Part&nbsp;1,&nbsp;there&nbsp;was&nbsp;a&nbsp;most&nbsp;unexpected&nbsp;result.\r\n\r\n&lt;img&nbsp;src=\"http:\/\/i.imgur.com\/xWZXUot.png\"&nbsp;alt=\"Puzzle&nbsp;creation&nbsp;challenge\"&nbsp;width=\"355\"&nbsp;height=\"329\"&gt;\r\n\r\nApparently,&nbsp;the&nbsp;entire&nbsp;helix&nbsp;was&nbsp;melted,&nbsp;even&nbsp;though&nbsp;there&nbsp;were&nbsp;3&nbsp;G-C&nbsp;pairs,&nbsp;and&nbsp;a&nbsp;GAAA&nbsp;tetraloop.&nbsp;According&nbsp;to&nbsp;the&nbsp;SHAPE&nbsp;reactivity&nbsp;data,&nbsp;every&nbsp;nucleotide&nbsp;except&nbsp;the&nbsp;cytosine&nbsp;residues&nbsp;in&nbsp;the&nbsp;CG\/CG&nbsp;quad&nbsp;are&nbsp;above&nbsp;0.5,&nbsp;meaning&nbsp;the&nbsp;presence&nbsp;of&nbsp;the&nbsp;fold&nbsp;in&nbsp;the&nbsp;ensemble&nbsp;is&nbsp;questionably&nbsp;low.&nbsp;This&nbsp;challenge&nbsp;is&nbsp;proposed&nbsp;to&nbsp;determine&nbsp;if&nbsp;the&nbsp;result&nbsp;for&nbsp;this&nbsp;helix&nbsp;can&nbsp;be&nbsp;duplicated,&nbsp;and&nbsp;to&nbsp;investigate&nbsp;this&nbsp;lack&nbsp;of&nbsp;stability.\r\n\r\nThere&nbsp;are&nbsp;two&nbsp;parts&nbsp;to&nbsp;this&nbsp;project,&nbsp;flipping&nbsp;the&nbsp;A-U&nbsp;pair&nbsp;in&nbsp;the&nbsp;helix.&nbsp;\r\n\r\nIf&nbsp;results&nbsp;are&nbsp;duplicated,&nbsp;I&nbsp;hope&nbsp;to&nbsp;create&nbsp;a&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;to&nbsp;mutate&nbsp;pairs&nbsp;in&nbsp;the&nbsp;stem&nbsp;and&nbsp;tetraloop,&nbsp;to&nbsp;determine&nbsp;what&nbsp;can&nbsp;stabilize&nbsp;the&nbsp;helix.\r\n\r\n25&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis"</span><span id="s-590" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-591" class="sObjectK">"title"</span><span id="s-592" class="sColon">:</span><span id="s-593" class="sObjectV">"Repeatability&nbsp;-&nbsp;Melted&nbsp;Helix&nbsp;Variation&nbsp;2"</span><span id="s-594" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-595" class="sObjectK">"status"</span><span id="s-596" class="sColon">:</span><span id="s-597" class="sObjectV">"1"</span><span id="s-598" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-599" class="sObjectK">"created"</span><span id="s-600" class="sColon">:</span><span id="s-601" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-602" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-603" class="sObjectK">"founder_uid"</span><span id="s-604" class="sColon">:</span><span id="s-605" class="sObjectV">"24263"</span><span id="s-606" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-607" class="sObjectK">"founder"</span><span id="s-608" class="sColon">:</span><span id="s-609" class="sObjectV">"Brourd"</span><span id="s-610" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-611" class="sObjectK">"founder_picture"</span><span id="s-612" class="sColon">:</span><span id="s-613" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-614" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-615" class="sObjectK">"proposed_date"</span><span id="s-616" class="sColon">:</span><span id="s-617" class="sObjectV">null</span><span id="s-618" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-619" class="sObjectK">"synth_date"</span><span id="s-620" class="sColon">:</span><span id="s-621" class="sObjectV">null</span><span id="s-622" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-623" class="sObjectK">"num_synth"</span><span id="s-624" class="sColon">:</span><span id="s-625" class="sObjectV">"25"</span><span id="s-626" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-627" class="sObjectK">"affiliation"</span><span id="s-628" class="sColon">:</span><span id="s-629" class="sObjectV">null</span><span id="s-630" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-631" class="sObjectK">"selection"</span><span id="s-632" class="sColon">:</span><span id="s-633" class="sObjectV">"user_vote"</span><span id="s-634" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-635" class="sObjectK">"cover_image"</span><span id="s-636" class="sColon">:</span><span id="s-637" class="sObjectV">null</span><span id="s-638" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-639" class="sObjectK">"cloud_round"</span><span id="s-640" class="sColon">:</span><span id="s-641" class="sObjectV">"11"</span><span id="s-642" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-643" class="sObjectK">"puzzles"</span><span id="s-644" class="sColon">:</span><span id="s-645" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-646" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-647" class="sObjectK">"round"</span><span id="s-648" class="sColon">:</span><span id="s-649" class="sObjectV">11</span><span id="s-650" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-651" class="sObjectK">"puzzles"</span><span id="s-652" class="sColon">:</span><span id="s-653" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-654" class="sArrayV">"3284565"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-655" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-656" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-657" class="sBracket structure-5">]</span><span id="s-658" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-659" class="sObjectK">"restart"</span><span id="s-660" class="sColon">:</span><span id="s-661" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-662" class="sBrace structure-4">}</span><span id="s-663" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-664" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-665" class="sObjectK">"nid"</span><span id="s-666" class="sColon">:</span><span id="s-667" class="sObjectV">"3376326"</span><span id="s-668" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-669" class="sObjectK">"body"</span><span id="s-670" class="sColon">:</span><span id="s-671" class="sObjectV">"According&nbsp;to&nbsp;the&nbsp;results&nbsp;for&nbsp;Location&nbsp;Dependent&nbsp;Chemical&nbsp;Footprints&nbsp;Part&nbsp;1,&nbsp;there&nbsp;was&nbsp;a&nbsp;most&nbsp;unexpected&nbsp;result.\r\n\r\n&lt;img&nbsp;src=\"http:\/\/i.imgur.com\/xWZXUot.png\"&nbsp;alt=\"Puzzle&nbsp;creation&nbsp;challenge\"&nbsp;width=\"355\"&nbsp;height=\"329\"&gt;\r\n\r\nApparently,&nbsp;the&nbsp;entire&nbsp;helix&nbsp;was&nbsp;melted,&nbsp;even&nbsp;though&nbsp;there&nbsp;were&nbsp;3&nbsp;G-C&nbsp;pairs,&nbsp;and&nbsp;a&nbsp;GAAA&nbsp;tetraloop.&nbsp;According&nbsp;to&nbsp;the&nbsp;SHAPE&nbsp;reactivity&nbsp;data,&nbsp;every&nbsp;nucleotide&nbsp;except&nbsp;the&nbsp;cytosine&nbsp;residues&nbsp;in&nbsp;the&nbsp;CG\/CG&nbsp;quad&nbsp;are&nbsp;above&nbsp;0.5,&nbsp;meaning&nbsp;the&nbsp;presence&nbsp;of&nbsp;the&nbsp;fold&nbsp;in&nbsp;the&nbsp;ensemble&nbsp;is&nbsp;questionably&nbsp;low.&nbsp;This&nbsp;challenge&nbsp;is&nbsp;proposed&nbsp;to&nbsp;determine&nbsp;if&nbsp;the&nbsp;result&nbsp;for&nbsp;this&nbsp;helix&nbsp;can&nbsp;be&nbsp;duplicated,&nbsp;and&nbsp;to&nbsp;investigate&nbsp;this&nbsp;lack&nbsp;of&nbsp;stability.\r\n\r\nThere&nbsp;are&nbsp;two&nbsp;parts&nbsp;to&nbsp;this&nbsp;project,&nbsp;flipping&nbsp;the&nbsp;A-U&nbsp;pair&nbsp;in&nbsp;the&nbsp;helix.&nbsp;\r\n\r\nIf&nbsp;results&nbsp;are&nbsp;duplicated,&nbsp;I&nbsp;hope&nbsp;to&nbsp;create&nbsp;a&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;to&nbsp;mutate&nbsp;pairs&nbsp;in&nbsp;the&nbsp;stem&nbsp;and&nbsp;tetraloop,&nbsp;to&nbsp;determine&nbsp;what&nbsp;can&nbsp;stabilize&nbsp;the&nbsp;helix.\r\n\r\n25&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis\r\n"</span><span id="s-672" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-673" class="sObjectK">"title"</span><span id="s-674" class="sColon">:</span><span id="s-675" class="sObjectV">"Repeatability&nbsp;-&nbsp;Melted&nbsp;Helix&nbsp;Variation&nbsp;1"</span><span id="s-676" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-677" class="sObjectK">"status"</span><span id="s-678" class="sColon">:</span><span id="s-679" class="sObjectV">"1"</span><span id="s-680" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-681" class="sObjectK">"created"</span><span id="s-682" class="sColon">:</span><span id="s-683" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-684" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-685" class="sObjectK">"founder_uid"</span><span id="s-686" class="sColon">:</span><span id="s-687" class="sObjectV">"24263"</span><span id="s-688" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-689" class="sObjectK">"founder"</span><span id="s-690" class="sColon">:</span><span id="s-691" class="sObjectV">"Brourd"</span><span id="s-692" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-693" class="sObjectK">"founder_picture"</span><span id="s-694" class="sColon">:</span><span id="s-695" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-696" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-697" class="sObjectK">"proposed_date"</span><span id="s-698" class="sColon">:</span><span id="s-699" class="sObjectV">null</span><span id="s-700" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-701" class="sObjectK">"synth_date"</span><span id="s-702" class="sColon">:</span><span id="s-703" class="sObjectV">null</span><span id="s-704" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-705" class="sObjectK">"num_synth"</span><span id="s-706" class="sColon">:</span><span id="s-707" class="sObjectV">"25"</span><span id="s-708" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-709" class="sObjectK">"affiliation"</span><span id="s-710" class="sColon">:</span><span id="s-711" class="sObjectV">null</span><span id="s-712" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-713" class="sObjectK">"selection"</span><span id="s-714" class="sColon">:</span><span id="s-715" class="sObjectV">"user_vote"</span><span id="s-716" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-717" class="sObjectK">"cover_image"</span><span id="s-718" class="sColon">:</span><span id="s-719" class="sObjectV">null</span><span id="s-720" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-721" class="sObjectK">"cloud_round"</span><span id="s-722" class="sColon">:</span><span id="s-723" class="sObjectV">"11"</span><span id="s-724" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-725" class="sObjectK">"puzzles"</span><span id="s-726" class="sColon">:</span><span id="s-727" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-728" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-729" class="sObjectK">"round"</span><span id="s-730" class="sColon">:</span><span id="s-731" class="sObjectV">11</span><span id="s-732" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-733" class="sObjectK">"puzzles"</span><span id="s-734" class="sColon">:</span><span id="s-735" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-736" class="sArrayV">"3284564"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-737" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-738" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-739" class="sBracket structure-5">]</span><span id="s-740" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-741" class="sObjectK">"restart"</span><span id="s-742" class="sColon">:</span><span id="s-743" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-744" class="sBrace structure-4">}</span><span id="s-745" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-746" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-747" class="sObjectK">"nid"</span><span id="s-748" class="sColon">:</span><span id="s-749" class="sObjectV">"3376306"</span><span id="s-750" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-751" class="sObjectK">"body"</span><span id="s-752" class="sColon">:</span><span id="s-753" class="sObjectV">"In&nbsp;RNA,&nbsp;interactions&nbsp;between&nbsp;any&nbsp;base&nbsp;can&nbsp;occur.&nbsp;In&nbsp;this&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;chemical&nbsp;footprint&nbsp;of&nbsp;these&nbsp;interactions,&nbsp;which&nbsp;can&nbsp;ultimately&nbsp;help&nbsp;with&nbsp;structure&nbsp;prediction&nbsp;and&nbsp;identifying&nbsp;protected&nbsp;base&nbsp;mismatches,&nbsp;for&nbsp;use&nbsp;in&nbsp;further&nbsp;experiments&nbsp;for&nbsp;determining&nbsp;the&nbsp;stability&nbsp;of&nbsp;these&nbsp;interactions.&nbsp;For&nbsp;this&nbsp;specific&nbsp;project,&nbsp;we&nbsp;will&nbsp;be&nbsp;testing&nbsp;the&nbsp;A-A&nbsp;mismatch.&nbsp;Since&nbsp;the&nbsp;use&nbsp;of&nbsp;longer&nbsp;RNA&nbsp;molecules&nbsp;is&nbsp;brand&nbsp;new,&nbsp;and&nbsp;the&nbsp;stability&nbsp;of&nbsp;such&nbsp;a&nbsp;long&nbsp;helix&nbsp;is&nbsp;unknown,&nbsp;only&nbsp;25&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis&nbsp;in&nbsp;this&nbsp;pilot&nbsp;run."</span><span id="s-754" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-755" class="sObjectK">"title"</span><span id="s-756" class="sColon">:</span><span id="s-757" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;A-A&nbsp;Mismatch&nbsp;-&nbsp;Pilot&nbsp;Run"</span><span id="s-758" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-759" class="sObjectK">"status"</span><span id="s-760" class="sColon">:</span><span id="s-761" class="sObjectV">"1"</span><span id="s-762" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-763" class="sObjectK">"created"</span><span id="s-764" class="sColon">:</span><span id="s-765" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-766" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-767" class="sObjectK">"founder_uid"</span><span id="s-768" class="sColon">:</span><span id="s-769" class="sObjectV">"24263"</span><span id="s-770" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-771" class="sObjectK">"founder"</span><span id="s-772" class="sColon">:</span><span id="s-773" class="sObjectV">"Brourd"</span><span id="s-774" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-775" class="sObjectK">"founder_picture"</span><span id="s-776" class="sColon">:</span><span id="s-777" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-778" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-779" class="sObjectK">"proposed_date"</span><span id="s-780" class="sColon">:</span><span id="s-781" class="sObjectV">null</span><span id="s-782" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-783" class="sObjectK">"synth_date"</span><span id="s-784" class="sColon">:</span><span id="s-785" class="sObjectV">null</span><span id="s-786" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-787" class="sObjectK">"num_synth"</span><span id="s-788" class="sColon">:</span><span id="s-789" class="sObjectV">"25"</span><span id="s-790" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-791" class="sObjectK">"affiliation"</span><span id="s-792" class="sColon">:</span><span id="s-793" class="sObjectV">null</span><span id="s-794" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-795" class="sObjectK">"selection"</span><span id="s-796" class="sColon">:</span><span id="s-797" class="sObjectV">"user_vote"</span><span id="s-798" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-799" class="sObjectK">"cover_image"</span><span id="s-800" class="sColon">:</span><span id="s-801" class="sObjectV">null</span><span id="s-802" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-803" class="sObjectK">"cloud_round"</span><span id="s-804" class="sColon">:</span><span id="s-805" class="sObjectV">"11"</span><span id="s-806" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-807" class="sObjectK">"puzzles"</span><span id="s-808" class="sColon">:</span><span id="s-809" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-810" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-811" class="sObjectK">"round"</span><span id="s-812" class="sColon">:</span><span id="s-813" class="sObjectV">11</span><span id="s-814" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-815" class="sObjectK">"puzzles"</span><span id="s-816" class="sColon">:</span><span id="s-817" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-818" class="sArrayV">"3263292"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-819" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-820" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-821" class="sBracket structure-5">]</span><span id="s-822" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-823" class="sObjectK">"restart"</span><span id="s-824" class="sColon">:</span><span id="s-825" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-826" class="sBrace structure-4">}</span><span id="s-827" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-828" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-829" class="sObjectK">"nid"</span><span id="s-830" class="sColon">:</span><span id="s-831" class="sObjectV">"3376291"</span><span id="s-832" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-833" class="sObjectK">"body"</span><span id="s-834" class="sColon">:</span><span id="s-835" class="sObjectV">"The&nbsp;majority&nbsp;of&nbsp;our&nbsp;puzzles&nbsp;all&nbsp;like&nbsp;the&nbsp;GAAA&nbsp;mismatch&nbsp;in&nbsp;Tetraloops&nbsp;but&nbsp;many&nbsp;solutions&nbsp;from&nbsp;nature&nbsp;have&nbsp;other&nbsp;configurations.&nbsp;Is&nbsp;this&nbsp;discrepancy&nbsp;due&nbsp;to&nbsp;a&nbsp;Eterna&nbsp;preference?\r\nTo&nbsp;test&nbsp;this,&nbsp;this&nbsp;series&nbsp;will&nbsp;synthesize&nbsp;various&nbsp;Tetraloop&nbsp;motifs&nbsp;to&nbsp;see&nbsp;if&nbsp;there&nbsp;is&nbsp;a&nbsp;distinct&nbsp;rank&nbsp;or&nbsp;synthesis&nbsp;preference.&nbsp;&nbsp;&nbsp;&nbsp;\r\nThis&nbsp;series&nbsp;of&nbsp;labs&nbsp;will&nbsp;test&nbsp;various&nbsp;Tetraloop&nbsp;configurations.&nbsp;If&nbsp;one&nbsp;configuration\r\nis&nbsp;superior&nbsp;to&nbsp;any&nbsp;other,&nbsp;I&nbsp;would&nbsp;think&nbsp;that&nbsp;the&nbsp;synthesis&nbsp;results&nbsp;would&nbsp;show&nbsp;superior&nbsp;as&nbsp;well,&nbsp;creating&nbsp;a&nbsp;clear&nbsp;rank&nbsp;in&nbsp;synthesis&nbsp;results.\r\n&nbsp;\r\nFeel&nbsp;free&nbsp;to&nbsp;add&nbsp;to&nbsp;the&nbsp;series&nbsp;with&nbsp;your&nbsp;favorite&nbsp;Tetraloop&nbsp;pattern.&nbsp;&nbsp;&nbsp;\r\n25&nbsp;slots&nbsp;requested&nbsp;per&nbsp;proposed&nbsp;lab."</span><span id="s-836" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-837" class="sObjectK">"title"</span><span id="s-838" class="sColon">:</span><span id="s-839" class="sObjectV">"Tetraloop&nbsp;Competition&nbsp;Series&nbsp;-&nbsp;GAGA"</span><span id="s-840" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-841" class="sObjectK">"status"</span><span id="s-842" class="sColon">:</span><span id="s-843" class="sObjectV">"1"</span><span id="s-844" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-845" class="sObjectK">"created"</span><span id="s-846" class="sColon">:</span><span id="s-847" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-848" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-849" class="sObjectK">"founder_uid"</span><span id="s-850" class="sColon">:</span><span id="s-851" class="sObjectV">"42833"</span><span id="s-852" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-853" class="sObjectK">"founder"</span><span id="s-854" class="sColon">:</span><span id="s-855" class="sObjectV">"JR"</span><span id="s-856" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-857" class="sObjectK">"founder_picture"</span><span id="s-858" class="sColon">:</span><span id="s-859" class="sObjectV">"sites\/default\/files\/pictures\/picture-42833.png"</span><span id="s-860" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-861" class="sObjectK">"proposed_date"</span><span id="s-862" class="sColon">:</span><span id="s-863" class="sObjectV">null</span><span id="s-864" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-865" class="sObjectK">"synth_date"</span><span id="s-866" class="sColon">:</span><span id="s-867" class="sObjectV">null</span><span id="s-868" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-869" class="sObjectK">"num_synth"</span><span id="s-870" class="sColon">:</span><span id="s-871" class="sObjectV">"25"</span><span id="s-872" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-873" class="sObjectK">"affiliation"</span><span id="s-874" class="sColon">:</span><span id="s-875" class="sObjectV">null</span><span id="s-876" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-877" class="sObjectK">"selection"</span><span id="s-878" class="sColon">:</span><span id="s-879" class="sObjectV">"user_vote"</span><span id="s-880" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-881" class="sObjectK">"cover_image"</span><span id="s-882" class="sColon">:</span><span id="s-883" class="sObjectV">null</span><span id="s-884" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-885" class="sObjectK">"cloud_round"</span><span id="s-886" class="sColon">:</span><span id="s-887" class="sObjectV">"11"</span><span id="s-888" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-889" class="sObjectK">"puzzles"</span><span id="s-890" class="sColon">:</span><span id="s-891" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-892" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-893" class="sObjectK">"round"</span><span id="s-894" class="sColon">:</span><span id="s-895" class="sObjectV">11</span><span id="s-896" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-897" class="sObjectK">"puzzles"</span><span id="s-898" class="sColon">:</span><span id="s-899" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-900" class="sArrayV">"3252126"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-901" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-902" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-903" class="sBracket structure-5">]</span><span id="s-904" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-905" class="sObjectK">"restart"</span><span id="s-906" class="sColon">:</span><span id="s-907" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-908" class="sBrace structure-4">}</span><span id="s-909" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-910" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-911" class="sObjectK">"nid"</span><span id="s-912" class="sColon">:</span><span id="s-913" class="sObjectV">"3376290"</span><span id="s-914" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-915" class="sObjectK">"body"</span><span id="s-916" class="sColon">:</span><span id="s-917" class="sObjectV">"The&nbsp;majority&nbsp;of&nbsp;our&nbsp;puzzles&nbsp;all&nbsp;like&nbsp;the&nbsp;GAAA&nbsp;mismatch&nbsp;in&nbsp;Tetraloops&nbsp;but&nbsp;many&nbsp;solutions&nbsp;from&nbsp;nature&nbsp;have&nbsp;other&nbsp;configurations.&nbsp;Is&nbsp;this&nbsp;discrepancy&nbsp;due&nbsp;to&nbsp;a&nbsp;Eterna&nbsp;preference?\r\nTo&nbsp;test&nbsp;this,&nbsp;this&nbsp;series&nbsp;will&nbsp;synthesize&nbsp;various&nbsp;Tetraloop&nbsp;motifs&nbsp;to&nbsp;see&nbsp;if&nbsp;there&nbsp;is&nbsp;a&nbsp;distinct&nbsp;rank&nbsp;or&nbsp;synthesis&nbsp;preference.&nbsp;&nbsp;&nbsp;&nbsp;\r\nThis&nbsp;series&nbsp;of&nbsp;labs&nbsp;will&nbsp;test&nbsp;various&nbsp;Tetraloop&nbsp;configurations.&nbsp;If&nbsp;one&nbsp;configuration\r\nis&nbsp;superior&nbsp;to&nbsp;any&nbsp;other,&nbsp;I&nbsp;would&nbsp;think&nbsp;that&nbsp;the&nbsp;synthesis&nbsp;results&nbsp;would&nbsp;show&nbsp;superior&nbsp;as&nbsp;well,&nbsp;creating&nbsp;a&nbsp;clear&nbsp;rank&nbsp;in&nbsp;synthesis&nbsp;results.\r\n&nbsp;\r\nFeel&nbsp;free&nbsp;to&nbsp;add&nbsp;to&nbsp;the&nbsp;series&nbsp;with&nbsp;your&nbsp;favorite&nbsp;Tetraloop&nbsp;pattern.&nbsp;&nbsp;&nbsp;\r\n25&nbsp;slots&nbsp;requested&nbsp;per&nbsp;proposed&nbsp;lab."</span><span id="s-918" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-919" class="sObjectK">"title"</span><span id="s-920" class="sColon">:</span><span id="s-921" class="sObjectV">"Tetraloop&nbsp;Competition&nbsp;Series&nbsp;-&nbsp;UACG"</span><span id="s-922" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-923" class="sObjectK">"status"</span><span id="s-924" class="sColon">:</span><span id="s-925" class="sObjectV">"1"</span><span id="s-926" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-927" class="sObjectK">"created"</span><span id="s-928" class="sColon">:</span><span id="s-929" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-930" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-931" class="sObjectK">"founder_uid"</span><span id="s-932" class="sColon">:</span><span id="s-933" class="sObjectV">"42833"</span><span id="s-934" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-935" class="sObjectK">"founder"</span><span id="s-936" class="sColon">:</span><span id="s-937" class="sObjectV">"JR"</span><span id="s-938" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-939" class="sObjectK">"founder_picture"</span><span id="s-940" class="sColon">:</span><span id="s-941" class="sObjectV">"sites\/default\/files\/pictures\/picture-42833.png"</span><span id="s-942" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-943" class="sObjectK">"proposed_date"</span><span id="s-944" class="sColon">:</span><span id="s-945" class="sObjectV">null</span><span id="s-946" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-947" class="sObjectK">"synth_date"</span><span id="s-948" class="sColon">:</span><span id="s-949" class="sObjectV">null</span><span id="s-950" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-951" class="sObjectK">"num_synth"</span><span id="s-952" class="sColon">:</span><span id="s-953" class="sObjectV">"25"</span><span id="s-954" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-955" class="sObjectK">"affiliation"</span><span id="s-956" class="sColon">:</span><span id="s-957" class="sObjectV">null</span><span id="s-958" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-959" class="sObjectK">"selection"</span><span id="s-960" class="sColon">:</span><span id="s-961" class="sObjectV">"user_vote"</span><span id="s-962" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-963" class="sObjectK">"cover_image"</span><span id="s-964" class="sColon">:</span><span id="s-965" class="sObjectV">null</span><span id="s-966" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-967" class="sObjectK">"cloud_round"</span><span id="s-968" class="sColon">:</span><span id="s-969" class="sObjectV">"11"</span><span id="s-970" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-971" class="sObjectK">"puzzles"</span><span id="s-972" class="sColon">:</span><span id="s-973" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-974" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-975" class="sObjectK">"round"</span><span id="s-976" class="sColon">:</span><span id="s-977" class="sObjectV">11</span><span id="s-978" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-979" class="sObjectK">"puzzles"</span><span id="s-980" class="sColon">:</span><span id="s-981" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-982" class="sArrayV">"3252125"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-983" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-984" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-985" class="sBracket structure-5">]</span><span id="s-986" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-987" class="sObjectK">"restart"</span><span id="s-988" class="sColon">:</span><span id="s-989" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-990" class="sBrace structure-4">}</span><span id="s-991" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-992" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-993" class="sObjectK">"nid"</span><span id="s-994" class="sColon">:</span><span id="s-995" class="sObjectV">"3376289"</span><span id="s-996" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-997" class="sObjectK">"body"</span><span id="s-998" class="sColon">:</span><span id="s-999" class="sObjectV">"The&nbsp;majority&nbsp;of&nbsp;our&nbsp;puzzles&nbsp;all&nbsp;like&nbsp;the&nbsp;GAAA&nbsp;mismatch&nbsp;in&nbsp;Tetraloops&nbsp;but&nbsp;many&nbsp;solutions&nbsp;from&nbsp;nature&nbsp;have&nbsp;other&nbsp;configurations.&nbsp;Is&nbsp;this&nbsp;discrepancy&nbsp;due&nbsp;to&nbsp;a&nbsp;Eterna&nbsp;preference?\r\nTo&nbsp;test&nbsp;this,&nbsp;this&nbsp;series&nbsp;will&nbsp;synthesize&nbsp;various&nbsp;Tetraloop&nbsp;motifs&nbsp;to&nbsp;see&nbsp;if&nbsp;there&nbsp;is&nbsp;a&nbsp;distinct&nbsp;rank&nbsp;or&nbsp;synthesis&nbsp;preference.&nbsp;&nbsp;&nbsp;&nbsp;\r\nThis&nbsp;series&nbsp;of&nbsp;labs&nbsp;will&nbsp;test&nbsp;various&nbsp;Tetraloop&nbsp;configurations.&nbsp;If&nbsp;one&nbsp;configuration\r\nis&nbsp;superior&nbsp;to&nbsp;any&nbsp;other,&nbsp;I&nbsp;would&nbsp;think&nbsp;that&nbsp;the&nbsp;synthesis&nbsp;results&nbsp;would&nbsp;show&nbsp;superior&nbsp;as&nbsp;well,&nbsp;creating&nbsp;a&nbsp;clear&nbsp;rank&nbsp;in&nbsp;synthesis&nbsp;results.\r\n&nbsp;\r\nFeel&nbsp;free&nbsp;to&nbsp;add&nbsp;to&nbsp;the&nbsp;series&nbsp;with&nbsp;your&nbsp;favorite&nbsp;Tetraloop&nbsp;pattern.&nbsp;&nbsp;&nbsp;\r\n25&nbsp;slots&nbsp;requested&nbsp;per&nbsp;proposed&nbsp;lab."</span><span id="s-1000" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1001" class="sObjectK">"title"</span><span id="s-1002" class="sColon">:</span><span id="s-1003" class="sObjectV">"Tetraloop&nbsp;Competition&nbsp;-&nbsp;UUCG"</span><span id="s-1004" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1005" class="sObjectK">"status"</span><span id="s-1006" class="sColon">:</span><span id="s-1007" class="sObjectV">"1"</span><span id="s-1008" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1009" class="sObjectK">"created"</span><span id="s-1010" class="sColon">:</span><span id="s-1011" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1012" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1013" class="sObjectK">"founder_uid"</span><span id="s-1014" class="sColon">:</span><span id="s-1015" class="sObjectV">"42833"</span><span id="s-1016" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1017" class="sObjectK">"founder"</span><span id="s-1018" class="sColon">:</span><span id="s-1019" class="sObjectV">"JR"</span><span id="s-1020" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1021" class="sObjectK">"founder_picture"</span><span id="s-1022" class="sColon">:</span><span id="s-1023" class="sObjectV">"sites\/default\/files\/pictures\/picture-42833.png"</span><span id="s-1024" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1025" class="sObjectK">"proposed_date"</span><span id="s-1026" class="sColon">:</span><span id="s-1027" class="sObjectV">null</span><span id="s-1028" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1029" class="sObjectK">"synth_date"</span><span id="s-1030" class="sColon">:</span><span id="s-1031" class="sObjectV">null</span><span id="s-1032" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1033" class="sObjectK">"num_synth"</span><span id="s-1034" class="sColon">:</span><span id="s-1035" class="sObjectV">"25"</span><span id="s-1036" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1037" class="sObjectK">"affiliation"</span><span id="s-1038" class="sColon">:</span><span id="s-1039" class="sObjectV">null</span><span id="s-1040" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1041" class="sObjectK">"selection"</span><span id="s-1042" class="sColon">:</span><span id="s-1043" class="sObjectV">"user_vote"</span><span id="s-1044" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1045" class="sObjectK">"cover_image"</span><span id="s-1046" class="sColon">:</span><span id="s-1047" class="sObjectV">null</span><span id="s-1048" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1049" class="sObjectK">"cloud_round"</span><span id="s-1050" class="sColon">:</span><span id="s-1051" class="sObjectV">"11"</span><span id="s-1052" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1053" class="sObjectK">"puzzles"</span><span id="s-1054" class="sColon">:</span><span id="s-1055" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1056" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1057" class="sObjectK">"round"</span><span id="s-1058" class="sColon">:</span><span id="s-1059" class="sObjectV">11</span><span id="s-1060" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1061" class="sObjectK">"puzzles"</span><span id="s-1062" class="sColon">:</span><span id="s-1063" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1064" class="sArrayV">"3252115"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1065" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1066" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1067" class="sBracket structure-5">]</span><span id="s-1068" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1069" class="sObjectK">"restart"</span><span id="s-1070" class="sColon">:</span><span id="s-1071" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1072" class="sBrace structure-4">}</span><span id="s-1073" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1074" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1075" class="sObjectK">"nid"</span><span id="s-1076" class="sColon">:</span><span id="s-1077" class="sObjectV">"3376288"</span><span id="s-1078" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1079" class="sObjectK">"body"</span><span id="s-1080" class="sColon">:</span><span id="s-1081" class="sObjectV">"The&nbsp;majority&nbsp;of&nbsp;our&nbsp;puzzles&nbsp;all&nbsp;like&nbsp;the&nbsp;GAAA&nbsp;mismatch&nbsp;in&nbsp;Tetraloops&nbsp;but&nbsp;many&nbsp;solutions&nbsp;from&nbsp;nature&nbsp;have&nbsp;other&nbsp;configurations.&nbsp;Is&nbsp;this&nbsp;discrepancy&nbsp;due&nbsp;to&nbsp;a&nbsp;Eterna&nbsp;preference?\r\nTo&nbsp;test&nbsp;this,&nbsp;this&nbsp;series&nbsp;will&nbsp;synthesize&nbsp;various&nbsp;Tetraloop&nbsp;motifs&nbsp;to&nbsp;see&nbsp;if&nbsp;there&nbsp;is&nbsp;a&nbsp;distinct&nbsp;rank&nbsp;or&nbsp;synthesis&nbsp;preference.&nbsp;&nbsp;&nbsp;&nbsp;\r\nThis&nbsp;series&nbsp;of&nbsp;labs&nbsp;will&nbsp;test&nbsp;various&nbsp;Tetraloop&nbsp;configurations.&nbsp;If&nbsp;one&nbsp;configuration\r\nis&nbsp;superior&nbsp;to&nbsp;any&nbsp;other,&nbsp;I&nbsp;would&nbsp;think&nbsp;that&nbsp;the&nbsp;synthesis&nbsp;results&nbsp;would&nbsp;show&nbsp;superior&nbsp;as&nbsp;well,&nbsp;creating&nbsp;a&nbsp;clear&nbsp;rank&nbsp;in&nbsp;synthesis&nbsp;results.\r\n&nbsp;\r\nFeel&nbsp;free&nbsp;to&nbsp;add&nbsp;to&nbsp;the&nbsp;series&nbsp;with&nbsp;your&nbsp;favorite&nbsp;Tetraloop&nbsp;pattern.&nbsp;&nbsp;&nbsp;\r\n25&nbsp;slots&nbsp;requested&nbsp;per&nbsp;proposed&nbsp;lab."</span><span id="s-1082" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1083" class="sObjectK">"title"</span><span id="s-1084" class="sColon">:</span><span id="s-1085" class="sObjectV">"Tetraloop&nbsp;Competition&nbsp;Series&nbsp;-&nbsp;GAAA"</span><span id="s-1086" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1087" class="sObjectK">"status"</span><span id="s-1088" class="sColon">:</span><span id="s-1089" class="sObjectV">"1"</span><span id="s-1090" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1091" class="sObjectK">"created"</span><span id="s-1092" class="sColon">:</span><span id="s-1093" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1094" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1095" class="sObjectK">"founder_uid"</span><span id="s-1096" class="sColon">:</span><span id="s-1097" class="sObjectV">"42833"</span><span id="s-1098" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1099" class="sObjectK">"founder"</span><span id="s-1100" class="sColon">:</span><span id="s-1101" class="sObjectV">"JR"</span><span id="s-1102" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1103" class="sObjectK">"founder_picture"</span><span id="s-1104" class="sColon">:</span><span id="s-1105" class="sObjectV">"sites\/default\/files\/pictures\/picture-42833.png"</span><span id="s-1106" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1107" class="sObjectK">"proposed_date"</span><span id="s-1108" class="sColon">:</span><span id="s-1109" class="sObjectV">null</span><span id="s-1110" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1111" class="sObjectK">"synth_date"</span><span id="s-1112" class="sColon">:</span><span id="s-1113" class="sObjectV">null</span><span id="s-1114" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1115" class="sObjectK">"num_synth"</span><span id="s-1116" class="sColon">:</span><span id="s-1117" class="sObjectV">"25"</span><span id="s-1118" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1119" class="sObjectK">"affiliation"</span><span id="s-1120" class="sColon">:</span><span id="s-1121" class="sObjectV">null</span><span id="s-1122" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1123" class="sObjectK">"selection"</span><span id="s-1124" class="sColon">:</span><span id="s-1125" class="sObjectV">"user_vote"</span><span id="s-1126" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1127" class="sObjectK">"cover_image"</span><span id="s-1128" class="sColon">:</span><span id="s-1129" class="sObjectV">null</span><span id="s-1130" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1131" class="sObjectK">"cloud_round"</span><span id="s-1132" class="sColon">:</span><span id="s-1133" class="sObjectV">"11"</span><span id="s-1134" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1135" class="sObjectK">"puzzles"</span><span id="s-1136" class="sColon">:</span><span id="s-1137" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1138" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1139" class="sObjectK">"round"</span><span id="s-1140" class="sColon">:</span><span id="s-1141" class="sObjectV">11</span><span id="s-1142" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1143" class="sObjectK">"puzzles"</span><span id="s-1144" class="sColon">:</span><span id="s-1145" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1146" class="sArrayV">"3252114"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1147" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1148" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1149" class="sBracket structure-5">]</span><span id="s-1150" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1151" class="sObjectK">"restart"</span><span id="s-1152" class="sColon">:</span><span id="s-1153" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1154" class="sBrace structure-4">}</span><span id="s-1155" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1156" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1157" class="sObjectK">"nid"</span><span id="s-1158" class="sColon">:</span><span id="s-1159" class="sObjectV">"3376286"</span><span id="s-1160" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1161" class="sObjectK">"body"</span><span id="s-1162" class="sColon">:</span><span id="s-1163" class="sObjectV">"In&nbsp;RNA,&nbsp;interactions&nbsp;between&nbsp;any&nbsp;base&nbsp;can&nbsp;occur.&nbsp;In&nbsp;this&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;chemical&nbsp;footprint&nbsp;of&nbsp;these&nbsp;interactions,&nbsp;which&nbsp;can&nbsp;ultimately&nbsp;help&nbsp;with&nbsp;structure&nbsp;prediction&nbsp;and&nbsp;identifying&nbsp;stable&nbsp;base&nbsp;mismatches,&nbsp;for&nbsp;use&nbsp;in&nbsp;further&nbsp;experiments&nbsp;for&nbsp;determining&nbsp;the&nbsp;stability&nbsp;of&nbsp;these&nbsp;interactions.&nbsp;For&nbsp;this&nbsp;specific&nbsp;project,&nbsp;we&nbsp;will&nbsp;be&nbsp;testing&nbsp;the&nbsp;A-G&nbsp;mismatch,&nbsp;adjacent&nbsp;to&nbsp;various&nbsp;unstable&nbsp;secondary&nbsp;structures,&nbsp;including&nbsp;the&nbsp;open&nbsp;loop,&nbsp;a&nbsp;multiloop,&nbsp;two&nbsp;hairpin&nbsp;loops,&nbsp;and&nbsp;a&nbsp;single&nbsp;nucleotide&nbsp;bulge.\r\n\r\nFor&nbsp;this&nbsp;pilot&nbsp;run,&nbsp;the&nbsp;sequences&nbsp;for&nbsp;the&nbsp;loops&nbsp;and&nbsp;the&nbsp;pairs&nbsp;closing&nbsp;them&nbsp;are&nbsp;locked.&nbsp;In&nbsp;addition,&nbsp;there&nbsp;will&nbsp;be&nbsp;two&nbsp;parts&nbsp;to&nbsp;each&nbsp;project,&nbsp;with&nbsp;orientation&nbsp;for&nbsp;the&nbsp;closing&nbsp;base&nbsp;pairs&nbsp;differing&nbsp;with&nbsp;each.&nbsp;20&nbsp;Slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-1164" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1165" class="sObjectK">"title"</span><span id="s-1166" class="sColon">:</span><span id="s-1167" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;A-G&nbsp;Mismatch&nbsp;-&nbsp;Pilot&nbsp;Run&nbsp;2B"</span><span id="s-1168" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1169" class="sObjectK">"status"</span><span id="s-1170" class="sColon">:</span><span id="s-1171" class="sObjectV">"1"</span><span id="s-1172" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1173" class="sObjectK">"created"</span><span id="s-1174" class="sColon">:</span><span id="s-1175" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1176" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1177" class="sObjectK">"founder_uid"</span><span id="s-1178" class="sColon">:</span><span id="s-1179" class="sObjectV">"24263"</span><span id="s-1180" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1181" class="sObjectK">"founder"</span><span id="s-1182" class="sColon">:</span><span id="s-1183" class="sObjectV">"Brourd"</span><span id="s-1184" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1185" class="sObjectK">"founder_picture"</span><span id="s-1186" class="sColon">:</span><span id="s-1187" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1188" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1189" class="sObjectK">"proposed_date"</span><span id="s-1190" class="sColon">:</span><span id="s-1191" class="sObjectV">null</span><span id="s-1192" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1193" class="sObjectK">"synth_date"</span><span id="s-1194" class="sColon">:</span><span id="s-1195" class="sObjectV">null</span><span id="s-1196" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1197" class="sObjectK">"num_synth"</span><span id="s-1198" class="sColon">:</span><span id="s-1199" class="sObjectV">"20"</span><span id="s-1200" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1201" class="sObjectK">"affiliation"</span><span id="s-1202" class="sColon">:</span><span id="s-1203" class="sObjectV">null</span><span id="s-1204" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1205" class="sObjectK">"selection"</span><span id="s-1206" class="sColon">:</span><span id="s-1207" class="sObjectV">"user_vote"</span><span id="s-1208" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1209" class="sObjectK">"cover_image"</span><span id="s-1210" class="sColon">:</span><span id="s-1211" class="sObjectV">null</span><span id="s-1212" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1213" class="sObjectK">"cloud_round"</span><span id="s-1214" class="sColon">:</span><span id="s-1215" class="sObjectV">"11"</span><span id="s-1216" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1217" class="sObjectK">"puzzles"</span><span id="s-1218" class="sColon">:</span><span id="s-1219" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1220" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1221" class="sObjectK">"round"</span><span id="s-1222" class="sColon">:</span><span id="s-1223" class="sObjectV">11</span><span id="s-1224" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1225" class="sObjectK">"puzzles"</span><span id="s-1226" class="sColon">:</span><span id="s-1227" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1228" class="sArrayV">"3246489"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1229" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1230" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1231" class="sBracket structure-5">]</span><span id="s-1232" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1233" class="sObjectK">"restart"</span><span id="s-1234" class="sColon">:</span><span id="s-1235" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1236" class="sBrace structure-4">}</span><span id="s-1237" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1238" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1239" class="sObjectK">"nid"</span><span id="s-1240" class="sColon">:</span><span id="s-1241" class="sObjectV">"3376285"</span><span id="s-1242" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1243" class="sObjectK">"body"</span><span id="s-1244" class="sColon">:</span><span id="s-1245" class="sObjectV">"In&nbsp;RNA,&nbsp;interactions&nbsp;between&nbsp;any&nbsp;base&nbsp;can&nbsp;occur.&nbsp;In&nbsp;this&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;chemical&nbsp;footprint&nbsp;of&nbsp;these&nbsp;interactions,&nbsp;which&nbsp;can&nbsp;ultimately&nbsp;help&nbsp;with&nbsp;structure&nbsp;prediction&nbsp;and&nbsp;identifying&nbsp;stable&nbsp;base&nbsp;mismatches,&nbsp;for&nbsp;use&nbsp;in&nbsp;further&nbsp;experiments&nbsp;for&nbsp;determining&nbsp;the&nbsp;stability&nbsp;of&nbsp;these&nbsp;interactions.&nbsp;For&nbsp;this&nbsp;specific&nbsp;project,&nbsp;we&nbsp;will&nbsp;be&nbsp;testing&nbsp;the&nbsp;A-G&nbsp;mismatch,&nbsp;adjacent&nbsp;to&nbsp;various&nbsp;unstable&nbsp;secondary&nbsp;structures,&nbsp;including&nbsp;the&nbsp;open&nbsp;loop,&nbsp;a&nbsp;multiloop,&nbsp;two&nbsp;hairpin&nbsp;loops,&nbsp;and&nbsp;a&nbsp;single&nbsp;nucleotide&nbsp;bulge.\r\n\r\nFor&nbsp;this&nbsp;pilot&nbsp;run,&nbsp;the&nbsp;sequences&nbsp;for&nbsp;the&nbsp;loops&nbsp;and&nbsp;the&nbsp;pairs&nbsp;closing&nbsp;them&nbsp;are&nbsp;locked.&nbsp;In&nbsp;addition,&nbsp;there&nbsp;will&nbsp;be&nbsp;two&nbsp;parts&nbsp;to&nbsp;each&nbsp;project,&nbsp;with&nbsp;orientation&nbsp;for&nbsp;the&nbsp;closing&nbsp;base&nbsp;pairs&nbsp;differing&nbsp;with&nbsp;each.&nbsp;20&nbsp;Slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-1246" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1247" class="sObjectK">"title"</span><span id="s-1248" class="sColon">:</span><span id="s-1249" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;A-G&nbsp;Mismatch&nbsp;-&nbsp;Pilot&nbsp;Run&nbsp;2A"</span><span id="s-1250" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1251" class="sObjectK">"status"</span><span id="s-1252" class="sColon">:</span><span id="s-1253" class="sObjectV">"1"</span><span id="s-1254" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1255" class="sObjectK">"created"</span><span id="s-1256" class="sColon">:</span><span id="s-1257" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1258" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1259" class="sObjectK">"founder_uid"</span><span id="s-1260" class="sColon">:</span><span id="s-1261" class="sObjectV">"24263"</span><span id="s-1262" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1263" class="sObjectK">"founder"</span><span id="s-1264" class="sColon">:</span><span id="s-1265" class="sObjectV">"Brourd"</span><span id="s-1266" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1267" class="sObjectK">"founder_picture"</span><span id="s-1268" class="sColon">:</span><span id="s-1269" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1270" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1271" class="sObjectK">"proposed_date"</span><span id="s-1272" class="sColon">:</span><span id="s-1273" class="sObjectV">null</span><span id="s-1274" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1275" class="sObjectK">"synth_date"</span><span id="s-1276" class="sColon">:</span><span id="s-1277" class="sObjectV">null</span><span id="s-1278" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1279" class="sObjectK">"num_synth"</span><span id="s-1280" class="sColon">:</span><span id="s-1281" class="sObjectV">"20"</span><span id="s-1282" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1283" class="sObjectK">"affiliation"</span><span id="s-1284" class="sColon">:</span><span id="s-1285" class="sObjectV">null</span><span id="s-1286" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1287" class="sObjectK">"selection"</span><span id="s-1288" class="sColon">:</span><span id="s-1289" class="sObjectV">"user_vote"</span><span id="s-1290" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1291" class="sObjectK">"cover_image"</span><span id="s-1292" class="sColon">:</span><span id="s-1293" class="sObjectV">null</span><span id="s-1294" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1295" class="sObjectK">"cloud_round"</span><span id="s-1296" class="sColon">:</span><span id="s-1297" class="sObjectV">"11"</span><span id="s-1298" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1299" class="sObjectK">"puzzles"</span><span id="s-1300" class="sColon">:</span><span id="s-1301" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1302" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1303" class="sObjectK">"round"</span><span id="s-1304" class="sColon">:</span><span id="s-1305" class="sObjectV">11</span><span id="s-1306" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1307" class="sObjectK">"puzzles"</span><span id="s-1308" class="sColon">:</span><span id="s-1309" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1310" class="sArrayV">"3246488"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1311" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1312" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1313" class="sBracket structure-5">]</span><span id="s-1314" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1315" class="sObjectK">"restart"</span><span id="s-1316" class="sColon">:</span><span id="s-1317" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1318" class="sBrace structure-4">}</span><span id="s-1319" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1320" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1321" class="sObjectK">"nid"</span><span id="s-1322" class="sColon">:</span><span id="s-1323" class="sObjectV">"3376274"</span><span id="s-1324" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1325" class="sObjectK">"body"</span><span id="s-1326" class="sColon">:</span><span id="s-1327" class="sObjectV">"In&nbsp;RNA,&nbsp;interactions&nbsp;between&nbsp;any&nbsp;base&nbsp;can&nbsp;occur.&nbsp;In&nbsp;this&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;chemical&nbsp;footprint&nbsp;of&nbsp;these&nbsp;interactions,&nbsp;which&nbsp;can&nbsp;ultimately&nbsp;help&nbsp;with&nbsp;structure&nbsp;prediction&nbsp;and&nbsp;identifying&nbsp;stable&nbsp;base&nbsp;mismatches,&nbsp;for&nbsp;use&nbsp;in&nbsp;further&nbsp;experiments&nbsp;for&nbsp;determining&nbsp;the&nbsp;stability&nbsp;of&nbsp;these&nbsp;interactions.&nbsp;For&nbsp;this&nbsp;specific&nbsp;project,&nbsp;we&nbsp;will&nbsp;be&nbsp;testing&nbsp;the&nbsp;U-U&nbsp;mismatch,&nbsp;adjacent&nbsp;to&nbsp;various&nbsp;unstable&nbsp;secondary&nbsp;structures,&nbsp;including&nbsp;the&nbsp;open&nbsp;loop,&nbsp;a&nbsp;multiloop,&nbsp;two&nbsp;hairpin&nbsp;loops,&nbsp;and&nbsp;a&nbsp;single&nbsp;nucleotide&nbsp;bulge.&lt;br&lt;br&gt;\r\nFor&nbsp;this&nbsp;pilot&nbsp;run,&nbsp;the&nbsp;sequences&nbsp;for&nbsp;the&nbsp;loops&nbsp;and&nbsp;the&nbsp;pairs&nbsp;closing&nbsp;them&nbsp;are&nbsp;locked.&nbsp;In&nbsp;addition,&nbsp;there&nbsp;will&nbsp;be&nbsp;two&nbsp;parts&nbsp;to&nbsp;each&nbsp;project,&nbsp;with&nbsp;orientation&nbsp;for&nbsp;the&nbsp;closing&nbsp;base&nbsp;pairs&nbsp;differing&nbsp;with&nbsp;each.&nbsp;20&nbsp;Slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-1328" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1329" class="sObjectK">"title"</span><span id="s-1330" class="sColon">:</span><span id="s-1331" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;U-U&nbsp;Mismatch&nbsp;-&nbsp;Pilot&nbsp;Run&nbsp;2B"</span><span id="s-1332" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1333" class="sObjectK">"status"</span><span id="s-1334" class="sColon">:</span><span id="s-1335" class="sObjectV">"1"</span><span id="s-1336" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1337" class="sObjectK">"created"</span><span id="s-1338" class="sColon">:</span><span id="s-1339" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1340" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1341" class="sObjectK">"founder_uid"</span><span id="s-1342" class="sColon">:</span><span id="s-1343" class="sObjectV">"24263"</span><span id="s-1344" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1345" class="sObjectK">"founder"</span><span id="s-1346" class="sColon">:</span><span id="s-1347" class="sObjectV">"Brourd"</span><span id="s-1348" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1349" class="sObjectK">"founder_picture"</span><span id="s-1350" class="sColon">:</span><span id="s-1351" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1352" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1353" class="sObjectK">"proposed_date"</span><span id="s-1354" class="sColon">:</span><span id="s-1355" class="sObjectV">null</span><span id="s-1356" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1357" class="sObjectK">"synth_date"</span><span id="s-1358" class="sColon">:</span><span id="s-1359" class="sObjectV">null</span><span id="s-1360" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1361" class="sObjectK">"num_synth"</span><span id="s-1362" class="sColon">:</span><span id="s-1363" class="sObjectV">"20"</span><span id="s-1364" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1365" class="sObjectK">"affiliation"</span><span id="s-1366" class="sColon">:</span><span id="s-1367" class="sObjectV">null</span><span id="s-1368" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1369" class="sObjectK">"selection"</span><span id="s-1370" class="sColon">:</span><span id="s-1371" class="sObjectV">"user_vote"</span><span id="s-1372" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1373" class="sObjectK">"cover_image"</span><span id="s-1374" class="sColon">:</span><span id="s-1375" class="sObjectV">null</span><span id="s-1376" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1377" class="sObjectK">"cloud_round"</span><span id="s-1378" class="sColon">:</span><span id="s-1379" class="sObjectV">"11"</span><span id="s-1380" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1381" class="sObjectK">"puzzles"</span><span id="s-1382" class="sColon">:</span><span id="s-1383" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1384" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1385" class="sObjectK">"round"</span><span id="s-1386" class="sColon">:</span><span id="s-1387" class="sObjectV">11</span><span id="s-1388" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1389" class="sObjectK">"puzzles"</span><span id="s-1390" class="sColon">:</span><span id="s-1391" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1392" class="sArrayV">"3244956"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1393" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1394" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1395" class="sBracket structure-5">]</span><span id="s-1396" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1397" class="sObjectK">"restart"</span><span id="s-1398" class="sColon">:</span><span id="s-1399" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1400" class="sBrace structure-4">}</span><span id="s-1401" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1402" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1403" class="sObjectK">"nid"</span><span id="s-1404" class="sColon">:</span><span id="s-1405" class="sObjectV">"3376273"</span><span id="s-1406" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1407" class="sObjectK">"body"</span><span id="s-1408" class="sColon">:</span><span id="s-1409" class="sObjectV">"In&nbsp;RNA,&nbsp;interactions&nbsp;between&nbsp;any&nbsp;base&nbsp;can&nbsp;occur.&nbsp;In&nbsp;this&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;chemical&nbsp;footprint&nbsp;of&nbsp;these&nbsp;interactions,&nbsp;which&nbsp;can&nbsp;ultimately&nbsp;help&nbsp;with&nbsp;structure&nbsp;prediction&nbsp;and&nbsp;identifying&nbsp;stable&nbsp;base&nbsp;mismatches,&nbsp;for&nbsp;use&nbsp;in&nbsp;further&nbsp;experiments&nbsp;for&nbsp;determining&nbsp;the&nbsp;stability&nbsp;of&nbsp;these&nbsp;interactions.&nbsp;For&nbsp;this&nbsp;specific&nbsp;project,&nbsp;we&nbsp;will&nbsp;be&nbsp;testing&nbsp;the&nbsp;U-U&nbsp;mismatch,&nbsp;adjacent&nbsp;to&nbsp;various&nbsp;unstable&nbsp;secondary&nbsp;structures,&nbsp;including&nbsp;the&nbsp;open&nbsp;loop,&nbsp;a&nbsp;multiloop,&nbsp;two&nbsp;hairpin&nbsp;loops,&nbsp;and&nbsp;a&nbsp;single&nbsp;nucleotide&nbsp;bulge.&lt;br&lt;br&gt;\r\nFor&nbsp;this&nbsp;pilot&nbsp;run,&nbsp;the&nbsp;sequences&nbsp;for&nbsp;the&nbsp;loops&nbsp;and&nbsp;the&nbsp;pairs&nbsp;closing&nbsp;them&nbsp;are&nbsp;locked.&nbsp;In&nbsp;addition,&nbsp;there&nbsp;will&nbsp;be&nbsp;two&nbsp;parts&nbsp;to&nbsp;each&nbsp;project,&nbsp;with&nbsp;orientation&nbsp;for&nbsp;the&nbsp;closing&nbsp;base&nbsp;pairs&nbsp;differing&nbsp;with&nbsp;each.&nbsp;20&nbsp;Slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-1410" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1411" class="sObjectK">"title"</span><span id="s-1412" class="sColon">:</span><span id="s-1413" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;U-U&nbsp;Mismatch&nbsp;-&nbsp;Pilot&nbsp;Run&nbsp;2A"</span><span id="s-1414" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1415" class="sObjectK">"status"</span><span id="s-1416" class="sColon">:</span><span id="s-1417" class="sObjectV">"1"</span><span id="s-1418" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1419" class="sObjectK">"created"</span><span id="s-1420" class="sColon">:</span><span id="s-1421" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1422" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1423" class="sObjectK">"founder_uid"</span><span id="s-1424" class="sColon">:</span><span id="s-1425" class="sObjectV">"24263"</span><span id="s-1426" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1427" class="sObjectK">"founder"</span><span id="s-1428" class="sColon">:</span><span id="s-1429" class="sObjectV">"Brourd"</span><span id="s-1430" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1431" class="sObjectK">"founder_picture"</span><span id="s-1432" class="sColon">:</span><span id="s-1433" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1434" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1435" class="sObjectK">"proposed_date"</span><span id="s-1436" class="sColon">:</span><span id="s-1437" class="sObjectV">null</span><span id="s-1438" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1439" class="sObjectK">"synth_date"</span><span id="s-1440" class="sColon">:</span><span id="s-1441" class="sObjectV">null</span><span id="s-1442" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1443" class="sObjectK">"num_synth"</span><span id="s-1444" class="sColon">:</span><span id="s-1445" class="sObjectV">"20"</span><span id="s-1446" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1447" class="sObjectK">"affiliation"</span><span id="s-1448" class="sColon">:</span><span id="s-1449" class="sObjectV">null</span><span id="s-1450" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1451" class="sObjectK">"selection"</span><span id="s-1452" class="sColon">:</span><span id="s-1453" class="sObjectV">"user_vote"</span><span id="s-1454" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1455" class="sObjectK">"cover_image"</span><span id="s-1456" class="sColon">:</span><span id="s-1457" class="sObjectV">null</span><span id="s-1458" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1459" class="sObjectK">"cloud_round"</span><span id="s-1460" class="sColon">:</span><span id="s-1461" class="sObjectV">"11"</span><span id="s-1462" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1463" class="sObjectK">"puzzles"</span><span id="s-1464" class="sColon">:</span><span id="s-1465" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1466" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1467" class="sObjectK">"round"</span><span id="s-1468" class="sColon">:</span><span id="s-1469" class="sObjectV">11</span><span id="s-1470" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1471" class="sObjectK">"puzzles"</span><span id="s-1472" class="sColon">:</span><span id="s-1473" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1474" class="sArrayV">"3244953"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1475" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1476" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1477" class="sBracket structure-5">]</span><span id="s-1478" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1479" class="sObjectK">"restart"</span><span id="s-1480" class="sColon">:</span><span id="s-1481" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1482" class="sBrace structure-4">}</span><span id="s-1483" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1484" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1485" class="sObjectK">"nid"</span><span id="s-1486" class="sColon">:</span><span id="s-1487" class="sObjectV">"3376269"</span><span id="s-1488" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1489" class="sObjectK">"body"</span><span id="s-1490" class="sColon">:</span><span id="s-1491" class="sObjectV">"It&nbsp;is&nbsp;well&nbsp;known,&nbsp;that&nbsp;multibranch&nbsp;loops&nbsp;are&nbsp;best&nbsp;closed&nbsp;with&nbsp;G-C&nbsp;pairs&nbsp;for&nbsp;stability.&nbsp;We&nbsp;even&nbsp;have&nbsp;a&nbsp;general&nbsp;rule&nbsp;that&nbsp;states&nbsp;they&nbsp;should&nbsp;be&nbsp;flipped&nbsp;a&nbsp;certain&nbsp;way.&nbsp;Now,&nbsp;this&nbsp;rule&nbsp;is&nbsp;not&nbsp;without&nbsp;merit,&nbsp;as&nbsp;it&nbsp;has&nbsp;been&nbsp;observed&nbsp;that&nbsp;the&nbsp;guanine&nbsp;on&nbsp;the&nbsp;3'&nbsp;side&nbsp;of&nbsp;the&nbsp;base&nbsp;pair&nbsp;can&nbsp;be&nbsp;exposed&nbsp;when&nbsp;the&nbsp;pair&nbsp;is&nbsp;not&nbsp;flipped&nbsp;correctly.&nbsp;The&nbsp;goal&nbsp;of&nbsp;this&nbsp;lab&nbsp;project&nbsp;is&nbsp;to&nbsp;determine&nbsp;if&nbsp;having&nbsp;these&nbsp;G-C&nbsp;pairs&nbsp;oriented&nbsp;like&nbsp;this&nbsp;contributes&nbsp;to&nbsp;instability&nbsp;in&nbsp;the&nbsp;design&nbsp;overall,&nbsp;and&nbsp;to&nbsp;determine&nbsp;how&nbsp;often&nbsp;and&nbsp;under&nbsp;what&nbsp;conditions,&nbsp;a&nbsp;reactive&nbsp;3'&nbsp;Guanine&nbsp;residue&nbsp;will&nbsp;occur.&nbsp;This&nbsp;is&nbsp;the&nbsp;second&nbsp;target&nbsp;structure&nbsp;in&nbsp;this&nbsp;lab&nbsp;challenge,&nbsp;with&nbsp;the&nbsp;length&nbsp;of&nbsp;the&nbsp;unpaired&nbsp;strands&nbsp;in&nbsp;the&nbsp;multibranch&nbsp;loop,&nbsp;decreased&nbsp;by&nbsp;1&nbsp;nucleotide&nbsp;each.&nbsp;40&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-1492" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1493" class="sObjectK">"title"</span><span id="s-1494" class="sColon">:</span><span id="s-1495" class="sObjectV">"Reversed&nbsp;G-C&nbsp;Multibranch&nbsp;Loop&nbsp;Closing&nbsp;Base&nbsp;Pairs&nbsp;2"</span><span id="s-1496" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1497" class="sObjectK">"status"</span><span id="s-1498" class="sColon">:</span><span id="s-1499" class="sObjectV">"1"</span><span id="s-1500" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1501" class="sObjectK">"created"</span><span id="s-1502" class="sColon">:</span><span id="s-1503" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1504" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1505" class="sObjectK">"founder_uid"</span><span id="s-1506" class="sColon">:</span><span id="s-1507" class="sObjectV">"24263"</span><span id="s-1508" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1509" class="sObjectK">"founder"</span><span id="s-1510" class="sColon">:</span><span id="s-1511" class="sObjectV">"Brourd"</span><span id="s-1512" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1513" class="sObjectK">"founder_picture"</span><span id="s-1514" class="sColon">:</span><span id="s-1515" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1516" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1517" class="sObjectK">"proposed_date"</span><span id="s-1518" class="sColon">:</span><span id="s-1519" class="sObjectV">null</span><span id="s-1520" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1521" class="sObjectK">"synth_date"</span><span id="s-1522" class="sColon">:</span><span id="s-1523" class="sObjectV">null</span><span id="s-1524" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1525" class="sObjectK">"num_synth"</span><span id="s-1526" class="sColon">:</span><span id="s-1527" class="sObjectV">"40"</span><span id="s-1528" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1529" class="sObjectK">"affiliation"</span><span id="s-1530" class="sColon">:</span><span id="s-1531" class="sObjectV">null</span><span id="s-1532" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1533" class="sObjectK">"selection"</span><span id="s-1534" class="sColon">:</span><span id="s-1535" class="sObjectV">"user_vote"</span><span id="s-1536" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1537" class="sObjectK">"cover_image"</span><span id="s-1538" class="sColon">:</span><span id="s-1539" class="sObjectV">null</span><span id="s-1540" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1541" class="sObjectK">"cloud_round"</span><span id="s-1542" class="sColon">:</span><span id="s-1543" class="sObjectV">"11"</span><span id="s-1544" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1545" class="sObjectK">"puzzles"</span><span id="s-1546" class="sColon">:</span><span id="s-1547" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1548" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1549" class="sObjectK">"round"</span><span id="s-1550" class="sColon">:</span><span id="s-1551" class="sObjectV">11</span><span id="s-1552" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1553" class="sObjectK">"puzzles"</span><span id="s-1554" class="sColon">:</span><span id="s-1555" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1556" class="sArrayV">"3242112"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1557" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1558" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1559" class="sBracket structure-5">]</span><span id="s-1560" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1561" class="sObjectK">"restart"</span><span id="s-1562" class="sColon">:</span><span id="s-1563" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1564" class="sBrace structure-4">}</span><span id="s-1565" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1566" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1567" class="sObjectK">"nid"</span><span id="s-1568" class="sColon">:</span><span id="s-1569" class="sObjectV">"3376264"</span><span id="s-1570" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1571" class="sObjectK">"body"</span><span id="s-1572" class="sColon">:</span><span id="s-1573" class="sObjectV">"In&nbsp;RNA,&nbsp;interactions&nbsp;between&nbsp;any&nbsp;base&nbsp;can&nbsp;occur.&nbsp;In&nbsp;this&nbsp;series&nbsp;of&nbsp;lab&nbsp;projects,&nbsp;the&nbsp;goal&nbsp;is&nbsp;to&nbsp;investigate&nbsp;the&nbsp;SHAPE&nbsp;chemical&nbsp;footprint&nbsp;of&nbsp;these&nbsp;interactions,&nbsp;which&nbsp;can&nbsp;ultimately&nbsp;help&nbsp;with&nbsp;structure&nbsp;prediction&nbsp;and&nbsp;identifying&nbsp;protected&nbsp;base&nbsp;mismatches,&nbsp;for&nbsp;use&nbsp;in&nbsp;further&nbsp;experiments&nbsp;for&nbsp;determining&nbsp;the&nbsp;stability&nbsp;of&nbsp;these&nbsp;interactions.&nbsp;For&nbsp;this&nbsp;specific&nbsp;project,&nbsp;we&nbsp;will&nbsp;be&nbsp;testing&nbsp;the&nbsp;G-G&nbsp;mismatch.&nbsp;Since&nbsp;the&nbsp;use&nbsp;of&nbsp;longer&nbsp;RNA&nbsp;molecules&nbsp;is&nbsp;brand&nbsp;new,&nbsp;and&nbsp;the&nbsp;stability&nbsp;of&nbsp;such&nbsp;a&nbsp;long&nbsp;helix&nbsp;is&nbsp;unknown,&nbsp;only&nbsp;25&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis&nbsp;in&nbsp;this&nbsp;pilot&nbsp;run."</span><span id="s-1574" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1575" class="sObjectK">"title"</span><span id="s-1576" class="sColon">:</span><span id="s-1577" class="sObjectV">"SHAPE&nbsp;Profile&nbsp;-&nbsp;G-G&nbsp;Mismatch&nbsp;-&nbsp;Pilot&nbsp;Run"</span><span id="s-1578" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1579" class="sObjectK">"status"</span><span id="s-1580" class="sColon">:</span><span id="s-1581" class="sObjectV">"1"</span><span id="s-1582" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1583" class="sObjectK">"created"</span><span id="s-1584" class="sColon">:</span><span id="s-1585" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1586" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1587" class="sObjectK">"founder_uid"</span><span id="s-1588" class="sColon">:</span><span id="s-1589" class="sObjectV">"24263"</span><span id="s-1590" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1591" class="sObjectK">"founder"</span><span id="s-1592" class="sColon">:</span><span id="s-1593" class="sObjectV">"Brourd"</span><span id="s-1594" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1595" class="sObjectK">"founder_picture"</span><span id="s-1596" class="sColon">:</span><span id="s-1597" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1598" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1599" class="sObjectK">"proposed_date"</span><span id="s-1600" class="sColon">:</span><span id="s-1601" class="sObjectV">null</span><span id="s-1602" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1603" class="sObjectK">"synth_date"</span><span id="s-1604" class="sColon">:</span><span id="s-1605" class="sObjectV">null</span><span id="s-1606" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1607" class="sObjectK">"num_synth"</span><span id="s-1608" class="sColon">:</span><span id="s-1609" class="sObjectV">"25"</span><span id="s-1610" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1611" class="sObjectK">"affiliation"</span><span id="s-1612" class="sColon">:</span><span id="s-1613" class="sObjectV">null</span><span id="s-1614" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1615" class="sObjectK">"selection"</span><span id="s-1616" class="sColon">:</span><span id="s-1617" class="sObjectV">"user_vote"</span><span id="s-1618" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1619" class="sObjectK">"cover_image"</span><span id="s-1620" class="sColon">:</span><span id="s-1621" class="sObjectV">null</span><span id="s-1622" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1623" class="sObjectK">"cloud_round"</span><span id="s-1624" class="sColon">:</span><span id="s-1625" class="sObjectV">"11"</span><span id="s-1626" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1627" class="sObjectK">"puzzles"</span><span id="s-1628" class="sColon">:</span><span id="s-1629" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1630" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1631" class="sObjectK">"round"</span><span id="s-1632" class="sColon">:</span><span id="s-1633" class="sObjectV">11</span><span id="s-1634" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1635" class="sObjectK">"puzzles"</span><span id="s-1636" class="sColon">:</span><span id="s-1637" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1638" class="sArrayV">"3230979"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1639" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1640" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1641" class="sBracket structure-5">]</span><span id="s-1642" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1643" class="sObjectK">"restart"</span><span id="s-1644" class="sColon">:</span><span id="s-1645" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1646" class="sBrace structure-4">}</span><span id="s-1647" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1648" class="sBrace structure-4">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1649" class="sObjectK">"nid"</span><span id="s-1650" class="sColon">:</span><span id="s-1651" class="sObjectV">"3376244"</span><span id="s-1652" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1653" class="sObjectK">"body"</span><span id="s-1654" class="sColon">:</span><span id="s-1655" class="sObjectV">"For&nbsp;this&nbsp;project,&nbsp;an&nbsp;investigation&nbsp;into&nbsp;the&nbsp;stability&nbsp;of&nbsp;the&nbsp;various&nbsp;G-U\/G-U&nbsp;wobble&nbsp;base&nbsp;pair&nbsp;quads&nbsp;is&nbsp;being&nbsp;made.&nbsp;In&nbsp;this&nbsp;instance,&nbsp;we&nbsp;have&nbsp;a&nbsp;four&nbsp;base&nbsp;pair&nbsp;helix,&nbsp;connecting&nbsp;two&nbsp;multibranch&nbsp;loops.&nbsp;The&nbsp;two&nbsp;central&nbsp;base&nbsp;pairs&nbsp;of&nbsp;this&nbsp;four&nbsp;base&nbsp;pair&nbsp;stem,&nbsp;are&nbsp;a&nbsp;control&nbsp;for&nbsp;the&nbsp;fourth&nbsp;lab,&nbsp;with&nbsp;two&nbsp;locked&nbsp;A-U&nbsp;pairs,&nbsp;or&nbsp;a&nbsp;-0.9&nbsp;kcal&nbsp;quad.&nbsp;This&nbsp;will&nbsp;be&nbsp;ran&nbsp;alongside&nbsp;7&nbsp;other&nbsp;projects,&nbsp;with&nbsp;4&nbsp;projects&nbsp;using&nbsp;G-U&nbsp;base&nbsp;pairs,&nbsp;and&nbsp;4&nbsp;projects&nbsp;using&nbsp;A-U&nbsp;base&nbsp;pairs&nbsp;as&nbsp;a&nbsp;control.&nbsp;30&nbsp;slots&nbsp;are&nbsp;requested&nbsp;for&nbsp;synthesis."</span><span id="s-1656" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1657" class="sObjectK">"title"</span><span id="s-1658" class="sColon">:</span><span id="s-1659" class="sObjectV">"Wobble&nbsp;Quad&nbsp;Control&nbsp;4"</span><span id="s-1660" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1661" class="sObjectK">"status"</span><span id="s-1662" class="sColon">:</span><span id="s-1663" class="sObjectV">"1"</span><span id="s-1664" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1665" class="sObjectK">"created"</span><span id="s-1666" class="sColon">:</span><span id="s-1667" class="sObjectV">"26&nbsp;Sep,&nbsp;2013"</span><span id="s-1668" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1669" class="sObjectK">"founder_uid"</span><span id="s-1670" class="sColon">:</span><span id="s-1671" class="sObjectV">"24263"</span><span id="s-1672" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1673" class="sObjectK">"founder"</span><span id="s-1674" class="sColon">:</span><span id="s-1675" class="sObjectV">"Brourd"</span><span id="s-1676" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1677" class="sObjectK">"founder_picture"</span><span id="s-1678" class="sColon">:</span><span id="s-1679" class="sObjectV">"sites\/default\/files\/pictures\/picture-24263.png"</span><span id="s-1680" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1681" class="sObjectK">"proposed_date"</span><span id="s-1682" class="sColon">:</span><span id="s-1683" class="sObjectV">null</span><span id="s-1684" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1685" class="sObjectK">"synth_date"</span><span id="s-1686" class="sColon">:</span><span id="s-1687" class="sObjectV">null</span><span id="s-1688" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1689" class="sObjectK">"num_synth"</span><span id="s-1690" class="sColon">:</span><span id="s-1691" class="sObjectV">"30"</span><span id="s-1692" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1693" class="sObjectK">"affiliation"</span><span id="s-1694" class="sColon">:</span><span id="s-1695" class="sObjectV">null</span><span id="s-1696" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1697" class="sObjectK">"selection"</span><span id="s-1698" class="sColon">:</span><span id="s-1699" class="sObjectV">"user_vote"</span><span id="s-1700" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1701" class="sObjectK">"cover_image"</span><span id="s-1702" class="sColon">:</span><span id="s-1703" class="sObjectV">null</span><span id="s-1704" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1705" class="sObjectK">"cloud_round"</span><span id="s-1706" class="sColon">:</span><span id="s-1707" class="sObjectV">"11"</span><span id="s-1708" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1709" class="sObjectK">"puzzles"</span><span id="s-1710" class="sColon">:</span><span id="s-1711" class="sBracket structure-5">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1712" class="sBrace structure-6">{</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1713" class="sObjectK">"round"</span><span id="s-1714" class="sColon">:</span><span id="s-1715" class="sObjectV">11</span><span id="s-1716" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1717" class="sObjectK">"puzzles"</span><span id="s-1718" class="sColon">:</span><span id="s-1719" class="sBracket structure-7">[</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1720" class="sArrayV">"3213932"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1721" class="sBracket structure-7">]</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1722" class="sBrace structure-6">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1723" class="sBracket structure-5">]</span><span id="s-1724" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1725" class="sObjectK">"restart"</span><span id="s-1726" class="sColon">:</span><span id="s-1727" class="sObjectV">false</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1728" class="sBrace structure-4">}</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1729" class="sBracket structure-3">]</span><span id="s-1730" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1731" class="sObjectK">"num_labs"</span><span id="s-1732" class="sColon">:</span><span id="s-1733" class="sObjectV">"23"</span><span id="s-1734" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1735" class="sObjectK">"num_slots"</span><span id="s-1736" class="sColon">:</span><span id="s-1737" class="sObjectV">"725"</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1738" class="sBrace structure-2">}</span><span id="s-1739" class="sComma">,</span><br /><span>&nbsp;&nbsp;&nbsp;</span><span id="s-1740" class="sObjectK">"memcache"</span><span id="s-1741" class="sColon">:</span><span id="s-1742" class="sObjectV">true</span><br /><span id="s-1743" class="sBrace structure-1">}</span></div>
 

Latest revision as of 15:40, 24 October 2013

Contents

Sample query

http://eterna.cmu.edu//get/?type=active_projects

Results

{
   "data":{
      "labs":[
         {
            "nid":"3381843",
            "body":"There are two ways to approach the problem I'm presenting this time.<br\/><br\/>The first is simply to try to solve the structure the way it is actually presented in the lab (see picture below), and get the best possible score. To those who will follow this path, I wish good luck. <br\/><br\/><img style=\"width: 400px;\"  src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_direct.png\"\/><br\/><i>(the color coding is simply blue\/yellow = paired\/unpaired)<\/i><br\/><br\/>The other path is (for my money) a little smarter. If you guys manage to create a so-called \"kissing hairpin\", which is another form of pseudoknot that we haven't played with until now, well, you may reach a 100 score, or very close, and given the outline below and our recent successes with pseudoknots, this seems to be easier.<br\/><br\/><img style=\"width: 400px;\" src=\"http:\/\/eternawiki.org\/wiki\/images\/NF3_kiss.png\" \/><br\/><br\/>Have fun! :)<br\/>",
            "title":"New Frontier 3",
            "status":"1",
            "created":"28 Sep, 2013",
            "founder_uid":"49507",
            "founder":"ElNando888",
            "founder_picture":"sites\/default\/files\/pictures\/picture-49507.png",
            "proposed_date":null,
            "synth_date":null,
            "num_synth":"60",
            "affiliation":null,
            "selection":"user_vote",
            "cover_image":"https:\/\/s3.amazonaws.com\/eterna\/puzzle_mid_thumbnails\/thumbnail3381843.png",
            "cloud_round":"11",
            "puzzles":[
               {
                  "round":11,
                  "puzzles":[
                     "3381842"
                  ]
               }
            ],
            "restart":false
         },
         {
            "nid":"3376361",
            "body":"As some of you may know, a handful of players have taken a keen interest in the analysis and discussion of Poly Adenine sequences. An important feature present in every run of protected Poly A is an exposed stretch of about 6 adenine residues on the 3' end. This project is meant to test several things.\r\n\r\n1. The stability of the poly A structure compared to the predicted MFE structure.\r\n\r\n2. The necessity of the 3' exposed adenine to not be participating in any interaction.\r\n\r\nHopefully, this project can shed a little light on the nature of the Poly A structure.\r\n\r\n30 slots are requested for synthesis.",
            "title":"Poly (A) Structure Analysis 1",
            "status":"1",
            "created":"26 Sep, 2013",
            "founder_uid":"24263",
            "founder":"Brourd",
            "founder_picture":"sites\/default\/files\/pictures\/picture-24263.png",
            "proposed_date":null,
            "synth_date":null,
            "num_synth":"30",
            "affiliation":null,
            "selection":"user_vote",
            "cover_image":null,
            "cloud_round":"11",
            "puzzles":[
               {
                  "round":11,
                  "puzzles":[
                     "3363516"
                  ]
               }
            ],
            "restart":false
         },
         ...
      ],
      "num_labs":"23",
      "num_slots":"725"
   },
   "memcache":true
}

Notes

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